View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330-Insertion-32 (Length: 139)
Name: NF4330-Insertion-32
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330-Insertion-32 |
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| [»] scaffold0015 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 183582 - 183444
Alignment:
| Q |
1 |
gcatcatcctccatgtcatccactccatgaacactagcagtcctctcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgt |
100 |
Q |
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| T |
183582 |
gcatcatcctccatgtcatccactccatgaacactagcagtcctctcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgt |
183483 |
T |
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| Q |
101 |
ccccaggccacatgcaagactccacgaatgactcaggtg |
139 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |
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| T |
183482 |
ccccaggccacatgtaagactccacgaatgactcaggtg |
183444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 27351876 - 27351739
Alignment:
| Q |
1 |
gcatcatcctccatgtcatccactccatgaacactagcagtcctctcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
27351876 |
gcatcatcctccatgtcatccactccgtgaacactagcagtcctctcatcatcttccgctgcaccatagtgttcaccccctccatagaaagtaggcatgt |
27351777 |
T |
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| Q |
101 |
ccccaggccacatgcaagactccacgaatgactcaggt |
138 |
Q |
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| T |
27351776 |
ccccaggccacatgcaagactccacgaatgactcaggt |
27351739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 123; Significance: 1e-63; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 353169 - 353307
Alignment:
| Q |
1 |
gcatcatcctccatgtcatccactccatgaacactagcagtcctctcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
353169 |
gcatcatcctccatgtcatccactccatgaacactagcagtcctatcatcatcttccgctgcaccatagtgttcaccccctccatagaaagtaggcctgt |
353268 |
T |
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| Q |
101 |
ccccaggccacatgcaagactccacgaatgactcaggtg |
139 |
Q |
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| T |
353269 |
ccccaggccacatgcaagactaaacgaatgactcaggtg |
353307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 29225119 - 29224981
Alignment:
| Q |
1 |
gcatcatcctccatgtcatccactccatgaacactagcagtcctctcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29225119 |
gcatcatcctccatgtcatccactccatgaacattagcagtcctctcatcatcttccgttgcaccatagtgttcaccccctccatagaaagtaggcctgt |
29225020 |
T |
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| Q |
101 |
ccccaggccacatgcaagactccacgaatgactcaggtg |
139 |
Q |
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| T |
29225019 |
ccccaggccacatgcaagactacacgaatgactcaggtg |
29224981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 29338418 - 29338280
Alignment:
| Q |
1 |
gcatcatcctccatgtcatccactccatgaacactagcagtcctctcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29338418 |
gcatcatcctccatgtcatccactccatgaacattagcagtcctctcatcatcttccgttgcaccatagtgttcaccccctccatagaaagtaggcctgt |
29338319 |
T |
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| Q |
101 |
ccccaggccacatgcaagactccacgaatgactcaggtg |
139 |
Q |
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| T |
29338318 |
ccccaggccacatgcaagactacacgaatgactcaggtg |
29338280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 1952972 - 1952879
Alignment:
| Q |
46 |
tcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgtccccaggccacatgcaagactccacgaatgactcaggtg |
139 |
Q |
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||||||||||||| ||| |||||||| |||| ||||||||||||||| || |||||||||||||||||||||||| ||| | |||||| ||||| |
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| T |
1952972 |
tcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaagacgccatgtatgactgaggtg |
1952879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 1949440 - 1949539
Alignment:
| Q |
40 |
gtcctctcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgtccccaggccacatgcaagactccacgaatgactcaggtg |
139 |
Q |
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||||| ||||||||||||| ||| |||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||| |||| |||||| ||||| |
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| T |
1949440 |
gtcctatcatcatcttccgttgcaccatagtgctcagtccctccatagaaagttggcctgtccccaagccacatgcaagacgccacatatgactgaggtg |
1949539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 12185088 - 12185043
Alignment:
| Q |
2 |
catcatcctccatgtcatccactccatgaacactagcagtcctctc |
47 |
Q |
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| T |
12185088 |
catcatcctacatgtcatcgacgccataaacactagcagtcctctc |
12185043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 121
Target Start/End: Complemental strand, 12184993 - 12184966
Alignment:
| Q |
94 |
ggcctgtccccaggccacatgcaagact |
121 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
12184993 |
ggcctgtccccaggccacatgcaagact |
12184966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 108658 - 108703
Alignment:
| Q |
2 |
catcatcctccatgtcatccactccatgaacactagcagtcctctc |
47 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
108658 |
catcatcctccatgtcatccacgccatgaacactagcagtcctctc |
108703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 121
Target Start/End: Original strand, 108753 - 108780
Alignment:
| Q |
94 |
ggcctgtccccaggccacatgcaagact |
121 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
108753 |
ggcctgtccccaggccacatgcaagact |
108780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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