View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330-Insertion-37 (Length: 74)
Name: NF4330-Insertion-37
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330-Insertion-37 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 7084471 - 7084541
Alignment:
| Q |
3 |
catgcatgacccaagggaagaacatatgcatgctctcaagcgcattgtgcgctacattcaggggtactctgg |
74 |
Q |
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| T |
7084471 |
catgcatgacccaagggaagaacatatgcatgctctcaagcgcattgtgcgctacattca-gggtactctgg |
7084541 |
T |
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Target: chr4 (Bit Score: 64; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 36649809 - 36649879
Alignment:
| Q |
3 |
catgcatgacccaagggaagaacatatgcatgctctcaagcgcattgtgcgctacattcaggggtactctgg |
74 |
Q |
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| T |
36649809 |
catgcatgacccaagggaagaacatatgcatgctctcaagcgcattgtgcgctacattca-gggtactctgg |
36649879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-28
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 1853360 - 1853422
Alignment:
| Q |
3 |
catgcatgacccaagggaagaacatatgcatgctctcaagcgcattgtgcgctacattcaggg |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1853360 |
catgcatgacccaagggaagaacatatgcatgctctcaagcgcattgtgcgctacattcaggg |
1853422 |
T |
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