View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4330-Insertion-40 (Length: 151)
Name: NF4330-Insertion-40
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330-Insertion-40 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] scaffold0264 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 27519756 - 27519632
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27519756 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
27519657 |
T |
|
| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
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||||||||||||||||||||||||| |
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| T |
27519656 |
gcagataccagtctaatcctggcaa |
27519632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 25807295 - 25807171
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25807295 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
25807196 |
T |
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| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
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||||||||||||||||||||||||| |
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| T |
25807195 |
gcagataccagtctaatcctggcaa |
25807171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 4e-55
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 31095847 - 31095971
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
31095847 |
gatcgaatgcgtgatattccatatgcttcagcaattgggtctatcatgtatgctatgatatgtactcaatcagatgtctcgtatgctttaagtgctacga |
31095946 |
T |
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| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
31095947 |
gccgataccagtctaatcctggcaa |
31095971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 9e-53
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 20940058 - 20940182
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
20940058 |
gatcaaatgcgtgatattccatatgcttcagcaattgggtctatcatgtatgttatgatatgtactcgaccagatgtctcatatgctttaagtgctacaa |
20940157 |
T |
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| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
20940158 |
gcagataccagtctaatcctggcaa |
20940182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 18112314 - 18112190
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18112314 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
18112215 |
T |
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| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
18112214 |
gcagataccagtctaatcctggcaa |
18112190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 15460528 - 15460652
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15460528 |
gatcgaatgcgtgatatcccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
15460627 |
T |
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| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
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||||||||||||||||||||||||| |
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| T |
15460628 |
gcagataccagtctaatcctggcaa |
15460652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 15821171 - 15821295
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15821171 |
gatcgaatgcgtgatatcccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
15821270 |
T |
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| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
15821271 |
gcagataccagtctaatcctggcaa |
15821295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 18162193 - 18162317
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18162193 |
gatcgaatgcgtgatattccatatgcttcggcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
18162292 |
T |
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| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
18162293 |
gcagataccagtctaatcctggcaa |
18162317 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28154984 - 28154951
Alignment:
| Q |
1 |
ccccctttttacctcaggatgtaggtgatcgaat |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
28154984 |
ccccctttttacctcaggatgtaggtgatcgaat |
28154951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 4946 - 4822
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4946 |
gatcgaatgcgtgatatcccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
4847 |
T |
|
| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||| |
|
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| T |
4846 |
gcagataccagtctaatcctggcaa |
4822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 131495 - 131371
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131495 |
gatcgaatgcgtgatatcccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
131396 |
T |
|
| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||| |
|
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| T |
131395 |
gcagataccagtctaatcctggcaa |
131371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 2e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 21913594 - 21913718
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21913594 |
gatcgaatgcgtgatatcccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
21913693 |
T |
|
| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
21913694 |
gcagataccagtctaatcctggcaa |
21913718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 27008788 - 27008664
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27008788 |
gatcgaatgcgtgatatcccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
27008689 |
T |
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| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27008688 |
gcagataccagtctaatcctggcaa |
27008664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 18406119 - 18406243
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18406119 |
gatcgaatgcgtgatatcccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
18406218 |
T |
|
| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
18406219 |
gcagataccagtctaatcctggcaa |
18406243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 6e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 6e-60
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 28135994 - 28135870
Alignment:
| Q |
27 |
gatcgaatgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
126 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28135994 |
gatcgaacgcgtgatattccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacga |
28135895 |
T |
|
| Q |
127 |
gcagataccagtctaatcctggcaa |
151 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
28135894 |
gcagataccagtctaatcatggcaa |
28135870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 19815548 - 19815655
Alignment:
| Q |
43 |
ttccatatgcttcagcaattggttctatcatgtatgctatgatatgtactcgaccagatgtctcgtatgctttaagtgctacgagcagataccagtctaa |
142 |
Q |
| |
|
||||||| || || |||||||| |||||||||||||||||| ||| |||||||||| |||||| |||||||||| |||| || ||| |||||||||| || |
|
|
| T |
19815548 |
ttccatacgcatctgcaattggatctatcatgtatgctatgttatatactcgaccatatgtcttgtatgctttatgtgcaac-agccgataccagtcgaa |
19815646 |
T |
|
| Q |
143 |
tcctggcaa |
151 |
Q |
| |
|
||||||||| |
|
|
| T |
19815647 |
tcctggcaa |
19815655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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