View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4330-Insertion-7 (Length: 275)

Name: NF4330-Insertion-7
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4330-Insertion-7
NF4330-Insertion-7
[»] chr8 (2 HSPs)
chr8 (8-275)||(9028486-9028754)
chr8 (146-270)||(22573135-22573259)
[»] chr7 (6 HSPs)
chr7 (71-273)||(23318854-23319056)
chr7 (157-263)||(41482422-41482528)
chr7 (162-263)||(2333993-2334094)
chr7 (158-274)||(39594631-39594747)
chr7 (157-253)||(24429707-24429803)
chr7 (167-265)||(39644909-39645007)
[»] chr4 (7 HSPs)
chr4 (157-270)||(45413772-45413885)
chr4 (157-265)||(2183300-2183408)
chr4 (146-265)||(33235785-33235904)
chr4 (157-265)||(36625538-36625646)
chr4 (152-274)||(33451319-33451441)
chr4 (209-264)||(19181467-19181522)
chr4 (157-270)||(26635263-26635376)
[»] chr1 (7 HSPs)
chr1 (157-270)||(26793757-26793870)
chr1 (167-261)||(45792690-45792784)
chr1 (167-263)||(50004908-50005004)
chr1 (157-264)||(49236173-49236280)
chr1 (152-242)||(19806753-19806843)
chr1 (157-270)||(6768262-6768375)
chr1 (157-273)||(9383229-9383345)
[»] chr3 (2 HSPs)
chr3 (157-275)||(40416943-40417061)
chr3 (209-270)||(48936355-48936414)
[»] chr5 (1 HSPs)
chr5 (152-273)||(34731266-34731387)
[»] chr2 (3 HSPs)
chr2 (167-262)||(7670385-7670480)
chr2 (212-270)||(16567767-16567825)
chr2 (152-273)||(40054460-40054581)
[»] chr6 (2 HSPs)
chr6 (158-239)||(129102-129183)
chr6 (157-242)||(8547437-8547522)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 9028486 - 9028754
Alignment:
Q  8 cagtagcaacagtatcgatttggtgttccagagggtgggaaagaagaaacacatgggaaaa-aacaattgagtaaaaatagcgtttgttgcagatggtga 106  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  9028486 cagtagcaacagtatcgatttggtgttccagagggtggaaaagaagaaacacatgggaaaaaaacaattgagtaaaattagcgtttgttgcagatggtga 9028585  T
Q  107 gagttgaagaatggttttggaggaaaatgaaaacacacttagttatatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttc 206  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  9028586 gagttgaagaagggttttggaggaaaatgaaaacacgcttagttatatcctatcaggttgctaacccatcaaaaaccaaggataagaattacaaaggttc 9028685  T
Q  207 aataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaaccgatttaagc 275  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  9028686 aataggataggattaaaaataggtttaaattatccttttatgttggtgcaccaaacaaccgatttaagc 9028754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 270
Target Start/End: Complemental strand, 22573259 - 22573135
Alignment:
Q  146 tagttatatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctatt 245  Q
    ||||| |||| ||||| |||| ||||||| ||||||| || | ||||||||||||||||||||||||||||||||| ||| ||||| || ||||| | |     
T  22573259 tagttttatcctatcatgttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttatcatttc 22573160  T
Q  246 ctgttggtacaccaaacaaccgatt 270  Q
    |||||||| ||||||||||| ||||    
T  22573159 ctgttggtgcaccaaacaacggatt 22573135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 273
Target Start/End: Original strand, 23318854 - 23319056
Alignment:
Q  71 caattgagtaaaaatagcgtttgttgcagatggtgagagttgaagaatggttttggaggaaaatgaaaacacactt-----agttatatcttatcaggtt 165  Q
    ||||||||||||  |||||||||||||||| || |||||| |||||| |||||||||||||| ||||||||| |||     ||||||||  || ||        
T  23318854 caattgagtaaagttagcgtttgttgcagaaggcgagagtcgaagaagggttttggaggaaactgaaaacacgcttctgatagttatatgctacca---- 23318949  T
Q  166 gctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaac 265  Q
     ||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |  |||||||  ||||||||||    
T  23318950 -ctaacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaac 23319048  T
Q  266 cgatttaa 273  Q
     |||||||    
T  23319049 agatttaa 23319056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 41482422 - 41482528
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 256  Q
    |||||||||||||||||| ||||||| || | ||| ||| ||||||| | | ||||||| |||||||||||||||||| ||||||| | |||||||| ||    
T  41482422 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggtgca 41482521  T
Q  257 ccaaaca 263  Q
    |||||||    
T  41482522 ccaaaca 41482528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 2333993 - 2334094
Alignment:
Q  162 ggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaa 261  Q
    ||||||||||| | |||||||||  | ||| ||| ||||| | | |||||||||||||||||||||||||||| |||||| || || ||||| |||||||    
T  2333993 ggttgctaaccaaccaaaaaccagagataaaaataacaaaaggtgaataggataggattaaaaataggtttaagttatccaatcctattggtgcaccaaa 2334092  T
Q  262 ca 263  Q
    ||    
T  2334093 ca 2334094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 39594747 - 39594631
Alignment:
Q  158 atcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacac 257  Q
    |||| |||||||||||||||||||| || | ||| ||||||||||| | |||| |||| |||||  ||||||||||| ||| | |||  | ||||| |||    
T  39594747 atcatgttgctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcac 39594648  T
Q  258 caaacaaccgatttaag 274  Q
    |||||||| ||||||||    
T  39594647 caaacaacggatttaag 39594631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 24429803 - 24429707
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggt 253  Q
    |||||||||||||||||| ||||||| || | ||| ||| ||||||| | | || |||||||||| |||||| ||||||||||| | |||| |||||    
T  24429803 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaattatcattttctattggt 24429707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 39645007 - 39644909
Alignment:
Q  167 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaac 265  Q
    |||||||| ||||||| || | ||| ||| ||||||| | | ||||||||||||| |||| ||||||| ||||||| |||| ||||  |||||||||||    
T  39645007 ctaacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaac 39644909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 45413772 - 45413885
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 256  Q
    |||||||||||||||||| ||||||| || | ||| ||| |||||||||  ||||||||||||   |||||||||||| ||||||| | || ||||| ||    
T  45413772 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcctttcctattggtgca 45413871  T
Q  257 ccaaacaaccgatt 270  Q
    ||||||||||||||    
T  45413872 ccaaacaaccgatt 45413885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 2183408 - 2183300
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 256  Q
    |||||||||||||||||| ||||||  || | ||| ||| |||||||||  |||||||||||||  ||||  |||||| ||||||| |||| ||||| ||    
T  2183408 tatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggattggaaatgagtttaatttatccttttctattggtgca 2183309  T
Q  257 ccaaacaac 265  Q
    |||||||||    
T  2183308 ccaaacaac 2183300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 33235785 - 33235904
Alignment:
Q  146 tagttatatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctatt 245  Q
    ||||| |||| |||||  |||||||| |||||||||  || | ||| |||||||||||||||||||||||||||||| || ||||| || ||||  | ||    
T  33235785 tagttttatcctatcatattgctaactcatcaaaaattaaggataataattacaaaggttcaataggataggattaagaacaggttaaacttattatttt 33235884  T
Q  246 ctgttggtacaccaaacaac 265  Q
    || ||||| |||||| ||||    
T  33235885 ctattggtgcaccaagcaac 33235904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 36625538 - 36625646
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 256  Q
    ||||| |||||||||||| ||||||  || | | ||||||||||||| | ||||||||||||||   ||||||||||| ||||| ||| || || || ||    
T  36625538 tatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggattcgtaataggtttaatttatcatatcctattagtgca 36625637  T
Q  257 ccaaacaac 265  Q
    |||||||||    
T  36625638 ccaaacaac 36625646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 274
Target Start/End: Complemental strand, 33451441 - 33451319
Alignment:
Q  152 tatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttg 251  Q
    |||||||||| |||| ||||||||||||||| || | | | ||||||||||| | |||||||||| | ||  ||||||||||  ||||| |||  | |||    
T  33451441 tatcttatcatgttgttaacccatcaaaaactaaggattataattacaaaggatgaataggatagaagtagtaataggtttattttatcatatcatattg 33451342  T
Q  252 gtacaccaaacaaccgatttaag 274  Q
    || |||||||||||  |||||||    
T  33451341 gtgcaccaaacaacgaatttaag 33451319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 19181467 - 19181522
Alignment:
Q  209 taggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaa 264  Q
    ||||||||||||| |||||||||||| ||||| |||  ||||||| ||||||||||    
T  19181467 taggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaacaa 19181522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 26635263 - 26635376
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 256  Q
    |||||||||||||||||| ||||||| || | ||||||| | |||||   | |||||||| |||  ||||||||| || ||||| |||  ||||||| ||    
T  26635263 tatcaggttgctaacccaccaaaaactaaggataagaataataaaggaggagtaggatagaattggaaataggttaaatttatcatatcatgttggtgca 26635362  T
Q  257 ccaaacaaccgatt 270  Q
    ||||| ||| ||||    
T  26635363 ccaaaaaacggatt 26635376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 270
Target Start/End: Complemental strand, 26793870 - 26793757
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 256  Q
    |||||||||||||||||| ||||||| ||   ||| ||| ||||||||| | ||||||||||||| ||||| |||||| ||||||| |||| ||||| ||    
T  26793870 tatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctattggtgca 26793771  T
Q  257 ccaaacaaccgatt 270  Q
    ||||||||| ||||    
T  26793770 ccaaacaacggatt 26793757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 45792690 - 45792784
Alignment:
Q  167 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaa 261  Q
    |||||||| ||||||| || | ||||||||||||||| ||||||||||||||||| ||| | ||| || ||||| | |||||||||| |||||||    
T  45792690 ctaacccaccaaaaactaaggataagaattacaaaggctcaataggataggattagaaacatgttaaacttatcattttctgttggtgcaccaaa 45792784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 50004908 - 50005004
Alignment:
Q  167 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaaca 263  Q
    |||||||| ||||||| || | ||| ||| ||||||| | | ||||||||||||| |||||||||||||||||||| || | ||||| |||||||||    
T  50004908 ctaacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaaca 50005004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 264
Target Start/End: Complemental strand, 49236280 - 49236173
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 256  Q
    |||||||||||||||||| |||||||||| | || |||| | |||||||   ||||||||||    ||||| |||||| ||||||| |||| ||||| ||    
T  49236280 tatcaggttgctaacccaccaaaaaccaaggatatgaataagaaaggttgggtaggataggaaatgaaatatgtttaatttatccttttctattggtgca 49236181  T
Q  257 ccaaacaa 264  Q
    ||||||||    
T  49236180 ccaaacaa 49236173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 19806753 - 19806843
Alignment:
Q  152 tatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcct 242  Q
    |||| |||||||||| ||||||| ||||||| || | | ||||  ||||||  | ||||||||||||||| |||||||||||| |||||||    
T  19806753 tatcatatcaggttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaataggtttaatttatcct 19806843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 270
Target Start/End: Complemental strand, 6768375 - 6768262
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 256  Q
    ||||||||| |||||||| ||||||  || | ||| ||| |||||||||  |||| |||||||   ||||| |||||| ||||| | |||| ||||||||    
T  6768375 tatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggataggaaataagtttaatttatcattttctattggtaca 6768276  T
Q  257 ccaaacaaccgatt 270  Q
    ||||||||| ||||    
T  6768275 ccaaacaacagatt 6768262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 9383229 - 9383345
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 256  Q
    |||||||||||||||||||||||||  || | | | ||| ||||||| | | ||||||| ||||| |||| ||||||| ||||||  | || ||||| ||    
T  9383229 tatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaattggtttaatttatccgttcctattggtgca 9383328  T
Q  257 ccaaacaaccgatttaa 273  Q
    ||||||||  |||||||    
T  9383329 ccaaacaatggatttaa 9383345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 40417061 - 40416943
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 256  Q
    |||||||||||||||| | |||||||||| | ||||||| | ||||| |   |||||||||||||||||||  ||||| ||||| | |||||||| | ||    
T  40417061 tatcaggttgctaaccaaacaaaaaccaaggataagaataataaagggttggtaggataggattaaaaatatatttaatttatcattttctgttgatgca 40416962  T
Q  257 ccaaacaaccgatttaagc 275  Q
    ||||||||| |||| ||||    
T  40416961 ccaaacaacggattgaagc 40416943  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 48936355 - 48936414
Alignment:
Q  209 taggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaaccgatt 270  Q
    ||||||||||||||||| ||||||||||||||   | |||||||| ||||||||||| ||||    
T  48936355 taggataggattaaaaacaggtttaaattatc--ttcctgttggtgcaccaaacaacggatt 48936414  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 34731387 - 34731266
Alignment:
Q  152 tatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttg 251  Q
    |||| |||||||||||||||||| | ||||| || | | | ||| ||||||| |  ||||||||||||||| ||||||||||  ||||||| | || |||    
T  34731387 tatcctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcctttcctattg 34731288  T
Q  252 gtacaccaaacaaccgatttaa 273  Q
    || ||||||||||  |||||||    
T  34731287 gtgcaccaaacaagggatttaa 34731266  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 7670480 - 7670385
Alignment:
Q  167 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaac 262  Q
    |||||||| ||||||  || | ||||||||||||| | ||||||||||||||||| ||| ||||| || ||||| | |||| ||||| ||||||||    
T  7670480 ctaacccaccaaaaattaaggataagaattacaaaagctcaataggataggattagaaacaggttaaacttatcattttctattggtgcaccaaac 7670385  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 16567767 - 16567825
Alignment:
Q  212 gataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaaccgatt 270  Q
    |||||||||| ||||||||| || ||||||| |||||||||| ||||||||||| ||||    
T  16567767 gataggattagaaataggttaaacttatccttttctgttggtgcaccaaacaacggatt 16567825  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 273
Target Start/End: Original strand, 40054460 - 40054581
Alignment:
Q  152 tatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttg 251  Q
    |||| ||| |||||||||||||| | ||||| || | | | ||| ||||||| |  ||||||||||||||| ||||||||||  ||||| | |||| |||    
T  40054460 tatcctattaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcattttctattg 40054559  T
Q  252 gtacaccaaacaaccgatttaa 273  Q
    || ||||||||||  |||||||    
T  40054560 gtgcaccaaacaagagatttaa 40054581  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 129102 - 129183
Alignment:
Q  158 atcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattat 239  Q
    |||| ||||||| |||||||||||| || | ||| ||| ||||||| | |||| |||||||||||||||  |||||| ||||    
T  129102 atcatgttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatgagtttaagttat 129183  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 8547437 - 8547522
Alignment:
Q  157 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcct 242  Q
    ||||| |||||||||||| ||||||| ||   ||| ||| ||||||| | |||| |||| ||||| |||||||||||| |||||||    
T  8547437 tatcatgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcct 8547522  T

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