View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330-Insertion-9 (Length: 236)
Name: NF4330-Insertion-9
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330-Insertion-9 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 4267422 - 4267647
Alignment:
| Q |
11 |
agtatgacttattatgtgattttggttcaatataaataatttttcatgtaattgtatgaaattcagttactagtgttatttttctttcattttcatatat |
110 |
Q |
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| T |
4267422 |
agtatgatttattatgtgattttggttcaatataaataatgtttcatataattgtatgaaattcagttactagtgttatttttctttcattttcatatat |
4267521 |
T |
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| Q |
111 |
acaaatggcatataattgtattttaagaatctgtataggggtacataacagtggcagaaacatgcacattatttaccatggacctggtttatctgatatc |
210 |
Q |
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| T |
4267522 |
acaaatagcatataattgtattttaagaatctgtataggggtacataacagtggcagaaacatgcacattatttaccatggacctggtttatctgatatc |
4267621 |
T |
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| Q |
211 |
atagtgagtgatttcattactattga |
236 |
Q |
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| T |
4267622 |
atagtgagtgatttcattactattga |
4267647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 4256867 - 4256989
Alignment:
| Q |
11 |
agtatgacttattatgtgattttggttcaatataaataatttttcatgtaattgtatgaaattcagttactagtgttatttttctttcattttcatatat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4256867 |
agtatgacttattatgtgattttggttcaatataaataatgtttcatataattgtatgaaattcagttactagtgttatttttctttcatttgcatatat |
4256966 |
T |
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| Q |
111 |
acaaatggcatataattgtattt |
133 |
Q |
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| T |
4256967 |
acaaatggaatatgatggtattt |
4256989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 4260380 - 4260464
Alignment:
| Q |
40 |
atataaataatttttcatgtaattgtatgaaattcagttactagtgttatttttctttcattttcatatatacaaatggcatata |
124 |
Q |
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| T |
4260380 |
atataaataatgtctcatataattgtatgaaattcagttactagtgttatttttatttcatttgcatatatacaaatgacatata |
4260464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 4260515 - 4260581
Alignment:
| Q |
132 |
tttaagaatctgtataggggtacataacagtggcagaaacatgcacattatttaccatggacctggt |
198 |
Q |
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| T |
4260515 |
tttaagaatctgcacaggggtacataattgtggcagaaacatgcacattatttactatggacctggt |
4260581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 4257045 - 4257097
Alignment:
| Q |
132 |
tttaagaatctgtataggggtacataacagtggcagaaacatgcacattattt |
184 |
Q |
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| T |
4257045 |
tttaagaatctgcataggggtacataatagtggcagaaacatgcacattattt |
4257097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 4289140 - 4289195
Alignment:
| Q |
132 |
tttaagaatctgtataggggtacataacagtggcagaaacatgcacattatttacc |
187 |
Q |
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| T |
4289140 |
tttaagaatctgcataggagtaaataataatggcagaaacatgcacattatttacc |
4289195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 4622016 - 4621953
Alignment:
| Q |
17 |
acttattatgtgattttggttcaatataaataatttttcatgtaattgtatgaaattcagttac |
80 |
Q |
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| T |
4622016 |
acttattatgtcattttagttcaatagaaataatgatacatataattgtatgaaattcatttac |
4621953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 24102914 - 24102821
Alignment:
| Q |
6 |
atataagtatgacttattatgtgattttggttcaatataaataatttttcatgtaattgtatgaaattcagttactagtgttatttttctttca |
99 |
Q |
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| T |
24102914 |
atataagtatgacttattatgtgattttggttcaatataaataatgtttcgtataattgtatggaattcaattactagtgttatttttctttca |
24102821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 24109361 - 24109251
Alignment:
| Q |
6 |
atataagtatgacttattatgtgattt-----tggttcaatataaataatttttcatgtaattgtatgaaattcagttactagtgttatttttctttcat |
100 |
Q |
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||||||||||||||||||||||||||| | |||||| ||||||||| |||||| ||| | ||||||||||||||||||||||||||||| |||||| |
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| T |
24109361 |
atataagtatgacttattatgtgatttaattttagttcaacataaataatgtttcatataactttatgaaattcagttactagtgttatttttgtttcat |
24109262 |
T |
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| Q |
101 |
tttcatatata |
111 |
Q |
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|| |||||||| |
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| T |
24109261 |
ttgcatatata |
24109251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 24102775 - 24102734
Alignment:
| Q |
195 |
tggtttatctgatatcatagtgagtgatttcattactattga |
236 |
Q |
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| T |
24102775 |
tggtttatctgatatcatagtgagtgatttcattactattga |
24102734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 24041299 - 24041261
Alignment:
| Q |
148 |
ggggtacataacagtggcagaaacatgcacattatttac |
186 |
Q |
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| T |
24041299 |
ggggtacataatagtggcagaaacatgcacattatttac |
24041261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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