View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4330_high_1 (Length: 496)
Name: NF4330_high_1
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 23932492 - 23932811
Alignment:
| Q |
1 |
atattaaccaagacaataaatacaacttacaattaaggtctaaaagtacctggaattttgttcacctagatacgggctttctcagctctcttaagatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
23932492 |
atattaaccaagacaataaatacaacttacaattaaggtctaaaagtacctggaattttgttcaccaagatacgggctttctctgctcgcttaagattta |
23932591 |
T |
|
| Q |
101 |
gatgagtgcctctaccagcattgtatcggttttcatcctagaagaaacaaatgtacaacaacattaataaactgtgcgatgctaaa-------tatggga |
193 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||| |
|
|
| T |
23932592 |
gatgagtacctctaccagcattgtaacggttttcatcctagaagaaacaaatgtacaacaacattagtaacctgtgcgatgataaatatggcctatggga |
23932691 |
T |
|
| Q |
194 |
gttgggatccatttacattgttcgataacataaacattgaatttcaccaccaatccaaccgtacaaatacatcataca----ttgttaatgataagcgtc |
289 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| || |
|
|
| T |
23932692 |
gttgggatccatttacgttgttcaataacataaacattgaatttcaccaccaatccaaccgtacaaatacaccatacattgtttgttaatgataagcatc |
23932791 |
T |
|
| Q |
290 |
aaaacttgatgtaagttact |
309 |
Q |
| |
|
||||||||||| || ||||| |
|
|
| T |
23932792 |
aaaacttgatgcaatttact |
23932811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 353 - 481
Target Start/End: Original strand, 23932855 - 23932983
Alignment:
| Q |
353 |
ctaactctgctatactcctccagccaagactcttcgtcacatgctgataaccatttctcaacattttcaagtatttctattctgctaaaagcttcctctt |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23932855 |
ctaactctgctatactcctccagccaagactcttcgtcacatgccgataaccacttctcaacattttcaagtatttctattctgctaaaagcttcctctt |
23932954 |
T |
|
| Q |
453 |
tgacttgggaaatctgacgctcaatttgt |
481 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23932955 |
tgacttgggaaatctgacgctcaatttgt |
23932983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 476
Target Start/End: Complemental strand, 34236860 - 34236737
Alignment:
| Q |
353 |
ctaactctgctatactcctccagccaagactcttcgtcacatgctgataaccatttctcaacattttcaagtatttctattctgctaaaagcttcctctt |
452 |
Q |
| |
|
||||| ||| |||| ||||| |||||||||||||||| |||||| | |||||||||||||| ||||||||||| ||| ||| | ||||||||||||| |
|
|
| T |
34236860 |
ctaaccctgttatattcctcaagccaagactcttcgttacatgcagccaaccatttctcaaccttttcaagtatgtcttttcgacccaaagcttcctctt |
34236761 |
T |
|
| Q |
453 |
tgacttgggaaatctgacgctcaa |
476 |
Q |
| |
|
| ||||||| || ||| ||||||| |
|
|
| T |
34236760 |
taacttgggcaacctggcgctcaa |
34236737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University