View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330_high_10 (Length: 255)
Name: NF4330_high_10
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 5273639 - 5273875
Alignment:
| Q |
19 |
gattctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaag |
118 |
Q |
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| T |
5273639 |
gattctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaag |
5273738 |
T |
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| Q |
119 |
tagaactgttacaattccatacactttcctcattcatctcaatctcgaactttgacaccttaaccaacccggttcaaacacaagccggtgatgacgccaa |
218 |
Q |
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| T |
5273739 |
tagaactgttacaattccacacactttcctcattcatctcaatctcgaacttcgacaccttaaccaacccggttcaaacacaagccggtgatgacgccaa |
5273838 |
T |
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| Q |
219 |
aaggctacaacttaatgtaacaacttctggcggtagc |
255 |
Q |
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| T |
5273839 |
aaggctacaacttaatgtaaccacttctggcggtagc |
5273875 |
T |
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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 36151143 - 36151324
Alignment:
| Q |
31 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
130 |
Q |
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| T |
36151143 |
ggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttac |
36151242 |
T |
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| Q |
131 |
aattccatacactttcctcattcatctcaatctcgaactttgacaccttaaccaacccggttcaaacacaagccggtgatga |
212 |
Q |
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| T |
36151243 |
agtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagccggtgatga |
36151324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 212
Target Start/End: Original strand, 36154535 - 36154710
Alignment:
| Q |
37 |
ttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttacaattcc |
136 |
Q |
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|||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| ||||| || | |
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| T |
36154535 |
ttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttc |
36154634 |
T |
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| Q |
137 |
atacactttcctcattcatctcaatctcgaactttgacaccttaaccaacccggttcaaacacaagccggtgatga |
212 |
Q |
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| T |
36154635 |
actcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagccggtgatga |
36154710 |
T |
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