View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4330_high_3 (Length: 434)
Name: NF4330_high_3
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330_high_3 |
 | |
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| [»] scaffold0056 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 12451718 - 12452132
Alignment:
| Q |
1 |
taaagtccttcgaccattcaaataaacgaagaacccctgacttcaaactgtcagttcccgcagcccaaactttacacacgtcttcatatgatgcaaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||| |
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|
| T |
12451718 |
taaagtccttcgaccattcaaataaacgaagaacccctagcttcaaactgacagttcccgcagcccaaaatttacacacatcttcgtatgatgcaaaggt |
12451817 |
T |
|
| Q |
101 |
aaattcataaaaccccttgcctaatgagcgtagactccaaggaccaggacatttccatattgtctgtagcttttcaaagacaaccttggaagagtatgga |
200 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
12451818 |
aaattcataaaatcccctacctaatgagcgtagactccaaggaccaggacgcttccatattgtctgtagcttttcaaagacagccttggaagagtatgaa |
12451917 |
T |
|
| Q |
201 |
gtatcccctttgttgagcatcagtctgccccgaaggtttggtccgacaagcttctaaaccacagacataagcttctttcgaaattttgactgacaacatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12451918 |
gtatcccctttgttgagcatcagtctgccccgaagg-ttggtccgacaagcttctaaaccacagacataagcttctttcgaaattttgactgacaacatg |
12452016 |
T |
|
| Q |
301 |
tcctcgcgaataacaggcaatggatggggttctgagtagataattgtagaaccgcgtgatgcctgagaaaaagaaggttttggagcggtagcttgtgttg |
400 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12452017 |
tccccgcgaataacaggcaatggaaggggttctgagtagataattgtagaaccgcgtaatgcctgagcaaaagaaggttttggagcggtagcttgtgttg |
12452116 |
T |
|
| Q |
401 |
gtgttgtaagcgcaac |
416 |
Q |
| |
|
|||||||||||||||| |
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| T |
12452117 |
gtgttgtaagcgcaac |
12452132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 21363874 - 21363459
Alignment:
| Q |
1 |
taaagtccttcgaccattcaaataaacgaagaacccctgacttcaaactgtcagttcccgcagcccaaactttacacacgtcttcatatgatgcaaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| | |||||||| |||||||||||| |
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|
| T |
21363874 |
taaagtccttcgaccattcaaataaacgaagaacccctcgcttcaaactgacagttcccgcaacccaaactttacagaagtcttcatgtgatgcaaaggt |
21363775 |
T |
|
| Q |
101 |
aaattcataaaaccccttgcctaatgagcgtagactccaaggaccaggacatttccatattgtctgtagcttttcaaagacaaccttggaagagtatgga |
200 |
Q |
| |
|
|||||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
21363774 |
aaattcataaaaccccctacgtaatgagcgtagactccaaggaccaggaagtttccatattgtctgtagcttttcaaagacagccttggaagagtatgga |
21363675 |
T |
|
| Q |
201 |
gtatcccctttgttgagcatcagtctgccccgaaggtttggtccgacaagcttctaaaccacagacataagcttctttcgaaattttgactgacaacatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
21363674 |
gtatcccctttgttgagcatcagtctgccccgaagg-ttggtccgaaaagcttctaaaccacggacataagcttcttttgaaattttgactgacaacatg |
21363576 |
T |
|
| Q |
301 |
tcctcgcgaataacaggcaatggatggggttctgagtagataattgtagaaccgcgtgatgcctgagaaaaagaaggttttggagcggtagcttgtgttg |
400 |
Q |
| |
|
||| | ||||| |||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21363575 |
tccccacgaattacaggcgatggaaggggttctgagtagataactgtagaaccgcgtaatgcctgagcaaaagaaggttttggagcggtagcttgtgttg |
21363476 |
T |
|
| Q |
401 |
gtgttgtaagcgcaact |
417 |
Q |
| |
|
||||| ||||||||||| |
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|
| T |
21363475 |
gtgttttaagcgcaact |
21363459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 22716079 - 22715665
Alignment:
| Q |
1 |
taaagtccttcgaccattcaaataaacgaagaacccctgacttcaaactgtcagttcccgcagcccaaactttacacacgtcttcatatgatgcaaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||| |
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|
| T |
22716079 |
taaagtccttcgaccattcaaataaacgaagaacccctggcttcaaactgacagttcccgcagcccaaactttacacaagtcttcatgtgatacaaaggt |
22715980 |
T |
|
| Q |
101 |
aaattcataaaaccccttgcctaatgagcgtagactccaaggaccaggacatttccatattgtctgtagcttttcaaagacaaccttggaagagtatgga |
200 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
22715979 |
aaattcataaaaaaccctacctaatgagcgtagactccaaggaccaggaagtttccatattgtctgtagcttttcaaagactgccttggaagagtatgga |
22715880 |
T |
|
| Q |
201 |
gtatcccctttgttgagcatcagtctgccccgaaggtttggtccgacaagcttctaaaccacagacataagcttctttcgaaattttgactgacaacatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
22715879 |
gtatcccctttgttgagcatcagtctgccccgaagg-ttggtccgacaagcatctaaaccacggacataagcttctttcgaaattttgacggacaacatg |
22715781 |
T |
|
| Q |
301 |
tcctcgcgaataacaggcaatggatggggttctgagtagataattgtagaaccgcgtgatgcctgagaaaaagaaggttttggagcggtagcttgtgttg |
400 |
Q |
| |
|
||| | |||||||||||| ||||| ||||||||| |||||||| |||||||||| || ||| ||||| |||||||||||| ||||||||||||||| || |
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|
| T |
22715780 |
tccccacgaataacaggcgatggaaggggttctgggtagataactgtagaaccgggtaatgactgagcaaaagaaggtttaggagcggtagcttgtatta |
22715681 |
T |
|
| Q |
401 |
gtgttgtaagcgcaac |
416 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
22715680 |
gtgttttaagcgcaac |
22715665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 12481077 - 12480663
Alignment:
| Q |
1 |
taaagtccttcgaccattcaaataaacgaagaacccctgacttcaaactgtcagttcccgcagcccaaactttacacacgtcttcatatgatgcaaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | |||||||||| |||||||||| ||||| ||||||||| |||||||| |||||||||||| |
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|
| T |
12481077 |
taaagtccttcgaccattcaaataaacgaataaccccgggcttcaaactggtagttcccgcaacccaagctttacacaagtcttcatgtgatgcaaaggt |
12480978 |
T |
|
| Q |
101 |
aaattcataaaaccccttgcctaatgagcgtagactccaaggaccaggacatttccatattgtctgtagcttttcaaagacaaccttggaagagtatgga |
200 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12480977 |
aaattcataaaaccccatacctaatgagcgtagactccaaggaccaggaagtttccatattgtctgtagcttttcaaagacaaccttggaagagtatgga |
12480878 |
T |
|
| Q |
201 |
gtatcccctttgttgagcatcagtctgccccgaaggtttggtccgacaagcttctaaaccacagacataagcttctttcgaaattttgactgacaacatg |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |
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|
| T |
12480877 |
gtatcccctttgttaagcatcagtctgccccgaagg-ttggtccgacaagcttctaaaccacggacataagcttctttcgaaatattaactgacaacatg |
12480779 |
T |
|
| Q |
301 |
tcctcgcgaataacaggcaatggatggggttctgagtagataattgtagaaccgcgtgatgcctgagaaaaagaaggttttggagcggtagcttgtgttg |
400 |
Q |
| |
|
||| | |||| |||||| |||| |||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
12480778 |
tccccatgaattacaggcgatggtaggggttctgagtagttaagtgtagaaccgcgtaatgcctgagcaaaagaaggttttcgagcggtagcttttgttg |
12480679 |
T |
|
| Q |
401 |
gtgttgtaagcgcaac |
416 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
12480678 |
gtgttttaagcgcaac |
12480663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 52 - 405
Target Start/End: Complemental strand, 77323 - 76972
Alignment:
| Q |
52 |
cagttcccgcagcccaaactttacacacgtcttcatatgatgcaaaggtaaattcataaaaccccttgcctaatgagcgtagactccaaggaccaggaca |
151 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||| || | ||||||||||||||||||||||||||| || |
|
|
| T |
77323 |
cagttcccgcagcccaaacttcacacaaatcttcatgtgatgcaaatgtaaattcataaaaaccgta-cctaatgagcgtagactccaaggaccaagaag |
77225 |
T |
|
| Q |
152 |
tttccatattgtctgtagcttttcaaagacaaccttggaagagtatggagtatcccctttgttgagcatcagtctgccccgaaggtttggtccgacaagc |
251 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
77224 |
tttccatattgtctgtagctttgcaaggacaaccttggaagagtatgtagtatcccctttgttgagcatcagtctaccccgaaggtt-ggtccgacaagc |
77126 |
T |
|
| Q |
252 |
ttctaaaccacagacataagcttctttcgaaattttgactgacaacatgtcctcgcgaataacaggcaatggatggggttctgagtagataattgtagaa |
351 |
Q |
| |
|
||||||| |||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||||||||| ||||||||||||| | |
|
|
| T |
77125 |
ttctaaaacacatatataagcttctttcgaaattttgactgacaacatgtccccacgaataacaggcgatgggaggggttctgcgtagataattgtatag |
77026 |
T |
|
| Q |
352 |
ccgcgtgatgcctgagaaaaagaaggttttggagcggtagcttgtgttggtgtt |
405 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
77025 |
ccgcgtaatgcctgagcaaaagaaggttttggaacggtagcttgtgtttgtgtt |
76972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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