View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4330_low_12 (Length: 240)

Name: NF4330_low_12
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4330_low_12
NF4330_low_12
[»] chr8 (1 HSPs)
chr8 (1-224)||(29157022-29157246)
[»] chr2 (5 HSPs)
chr2 (1-224)||(2595981-2596205)
chr2 (3-224)||(2588906-2589128)
chr2 (1-224)||(2581292-2581516)
chr2 (39-224)||(2576856-2577041)
chr2 (129-173)||(14514925-14514969)
[»] chr3 (3 HSPs)
chr3 (1-224)||(21642554-21642778)
chr3 (1-224)||(21620884-21621108)
chr3 (118-193)||(3625739-3625814)
[»] chr6 (4 HSPs)
chr6 (1-223)||(30399098-30399321)
chr6 (129-173)||(6921351-6921395)
chr6 (129-173)||(6947881-6947925)
chr6 (129-173)||(20770675-20770719)
[»] chr7 (9 HSPs)
chr7 (1-223)||(46769346-46769569)
chr7 (27-192)||(36260259-36260424)
chr7 (127-193)||(19604462-19604528)
chr7 (118-192)||(36255372-36255446)
chr7 (124-189)||(29106823-29106888)
chr7 (132-192)||(36263059-36263119)
chr7 (129-192)||(660848-660911)
chr7 (118-190)||(18997588-18997660)
chr7 (129-173)||(20352120-20352164)
[»] chr4 (6 HSPs)
chr4 (133-192)||(35767024-35767083)
chr4 (129-203)||(3560959-3561033)
chr4 (27-183)||(19359152-19359308)
chr4 (129-173)||(53774865-53774909)
chr4 (129-203)||(3565739-3565813)
chr4 (118-192)||(19361448-19361522)
[»] chr1 (1 HSPs)
chr1 (126-192)||(4014963-4015029)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29157246 - 29157022
Alignment:
Q  1 tatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaa 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29157246 tatagaattgcccgttgttcttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtcagcaa 29157147  T
Q  100 aatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29157146 aatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatgtttccatctgccatataatgaattc 29157047  T
Q  200 ggttcttctataatcatgagaaaaa 224  Q
    |||||||||||||||||||||||||    
T  29157046 ggttcttctataatcatgagaaaaa 29157022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2596205 - 2595981
Alignment:
Q  1 tatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaa 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2596205 tatagaattgctcgttgttcttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtcagcaa 2596106  T
Q  100 aatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattc 199  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||||    
T  2596105 aatcatgaaatctagtccgaagattttggtaactaattttaaggagttgagtccatggctcttcaactccaataatcttcatctgccatataatgaattc 2596006  T
Q  200 ggttcttctataatcatgagaaaaa 224  Q
     |||||||| |||||||||||||||    
T  2596005 agttcttctgtaatcatgagaaaaa 2595981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 2589128 - 2588906
Alignment:
Q  3 tagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaa 101  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||    
T  2589128 tagaattgctcgttgttcttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaattttccaagtcatcaaaa 2589029  T
Q  102 tcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattcgg 201  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||  || | ||||||||||| ||||||||| |    
T  2589028 tcatgaaatctagttcgaagattttggtagctaattttaaggagttgagtccatggctcttcaactccaatgatcttcatctgccatacaatgaattcag 2588929  T
Q  202 ttcttctataatcatgagaaaaa 224  Q
    |||| |  | |||||||||||||    
T  2588928 ttctccagttatcatgagaaaaa 2588906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2581516 - 2581292
Alignment:
Q  1 tatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaa 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||  |||    
T  2581516 tatagaattgctcgttgttcttgattattagccaatattagtgtatcattgtgatcagaaaggtgcaaaggcaacaattgacaattttccaagtcatcaa 2581417  T
Q  100 aatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattc 199  Q
    || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||  || | ||||||||||||||  |||||    
T  2581416 aagcatgatatctagttcgaagaatttggtaactaattttaaggagttgagtccatgactcgtcaactccaatgatcttcatctgccatataaccaattc 2581317  T
Q  200 ggttcttctataatcatgagaaaaa 224  Q
     ||||||||   |||||||||||||    
T  2581316 agttcttctgacatcatgagaaaaa 2581292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 224
Target Start/End: Complemental strand, 2577041 - 2576856
Alignment:
Q  39 agtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattt 138  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||| ||  ||||| |||||||||||||||    
T  2577041 agtgtatcgctgtgatcagaaaggtgcaatggcaacaactgaaaatttttcaagtcagcaaaatcatgatatcttgtctgaagattttggtaactaattt 2576942  T
Q  139 taaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattcggttcttctataatcatgagaaaaa 224  Q
    |||||||||||||||||||||||||||||||||  || | |||||||||||||| |||||| |||||||| |||||||||||||||    
T  2576941 taaggagttgagtccatggctcttcaactccaatgatcttcatctgccatataacgaattcagttcttctgtaatcatgagaaaaa 2576856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 14514969 - 14514925
Alignment:
Q  129 taactaattttaaggagttgagtccatggctcttcaactccaaat 173  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  14514969 taactaattttaaggaattgagtccaagaatcttcaactccaaat 14514925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 21642554 - 21642778
Alignment:
Q  1 tatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaa 99  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||    
T  21642554 tatagaattgctcgttgttcttgattattagccaatattagtgtatcgttgtgatccgaaaggtgcaatggcaacaattgacatttttccaagtcagcaa 21642653  T
Q  100 aatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattc 199  Q
    |||||||| ||||||| |||||| ||||||| |||||||||||||||| |||||| ||||||| |||||||||| ||| ||||| |||||||||||||||    
T  21642654 aatcatgatatctagtccgaagattttggtagctaattttaaggagttaagtccacggctctttaactccaaatgttttcatcttccatataatgaattc 21642753  T
Q  200 ggttcttctataatcatgagaaaaa 224  Q
     |||||| | |||||||||||||||    
T  21642754 agttcttttgtaatcatgagaaaaa 21642778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 21620884 - 21621108
Alignment:
Q  1 tatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaa 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |||||| ||||    
T  21620884 tatagaattgctcgttgttcttgattattagccaatattagtgtatcgttgtgctccgaaaggtgcaatggcaacaattgacatttttccaagtcagcaa 21620983  T
Q  100 aatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattc 199  Q
    |||||||| ||||||| |||||| ||||||| |||||||||||||||| |||||| | |||||||||||||||| ||| ||||| |||||||||||||||    
T  21620984 aatcatgatatctagtccgaagattttggtagctaattttaaggagttaagtccacgcctcttcaactccaaatgttttcatcttccatataatgaattc 21621083  T
Q  200 ggttcttctataatcatgagaaaaa 224  Q
     |||||| | |||||||||||||||    
T  21621084 agttcttttgtaatcatgagaaaaa 21621108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 3625814 - 3625739
Alignment:
Q  118 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataat 193  Q
    ||||| |||| |||||||||||||| | ||||||||| | ||||||||| |||||| | | ||| |||||||||||    
T  3625814 gaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataat 3625739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30399321 - 30399098
Alignment:
Q  1 tatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaa 99  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||    
T  30399321 tatagaattgctcgttgttcttgattattagccaatattagtgtatagttgtgatccgaaaggtgcaatggcaacaattgacaattttccaagtcagcaa 30399222  T
Q  100 aatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattc 199  Q
    |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||| ||||||||||||| |||| ||| ||||| ||||||||||||||     
T  30399221 aatcatgatatctagtccgaagattttggcagctaattttaaggagttgagtccacggctcttcaactctaaatgttttcatcttccatataatgaattt 30399122  T
Q  200 ggttcttctataatcatgagaaaa 223  Q
     |||||| | ||||||| ||||||    
T  30399121 agttcttttgtaatcattagaaaa 30399098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 6921351 - 6921395
Alignment:
Q  129 taactaattttaaggagttgagtccatggctcttcaactccaaat 173  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  6921351 taactaattttaaggaattgagtccaagattcttcaactccaaat 6921395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 6947881 - 6947925
Alignment:
Q  129 taactaattttaaggagttgagtccatggctcttcaactccaaat 173  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  6947881 taactaattttaaggaattgagtccaagattcttcaactccaaat 6947925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 20770719 - 20770675
Alignment:
Q  129 taactaattttaaggagttgagtccatggctcttcaactccaaat 173  Q
    |||||||||||||||| |||| |||||| |||||||| |||||||    
T  20770719 taactaattttaaggaattgaatccatgactcttcaattccaaat 20770675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46769569 - 46769346
Alignment:
Q  1 tatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaa 99  Q
    ||||||||||| || |||| |||||| || ||||||||| |||||||  | |||||| |||||||||||||| |||| ||||||| || |||||| ||||    
T  46769569 tatagaattgctcgctgttcttgattgttggccaatattcgtgtatcactttgatcataaaggtgcaatggcgacaactgacaatattccaagtcagcaa 46769470  T
Q  100 aatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattc 199  Q
    |||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||    
T  46769469 aatcatgaaatctagtccgaagattttggtaactaattttaagaagttgagtccaaggctcttcaactccgaatattttcatctgccacataatgaattc 46769370  T
Q  200 ggttcttctataatcatgagaaaa 223  Q
     |||||| |  |||||||||||||    
T  46769369 agttcttttgaaatcatgagaaaa 46769346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 36260424 - 36260259
Alignment:
Q  27 ttagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagttt 126  Q
    ||||||||||||||||||||    |||||||||||||||||||||||| ||| | ||  || ||||||  ||||  || ||  | || | |||||| |||    
T  36260424 ttagccaatattagtgtatcaccatgatcagaaaggtgcaatggcaaccatttagaaagttccaagtcaacaaagccacgatgtatactccgaagatttt 36260325  T
Q  127 ggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 192  Q
    | || ||||||||||  |||||| |||| | ||||||||||||||||  |||||||| ||||||||    
T  36260324 gatagctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataa 36260259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 19604462 - 19604528
Alignment:
Q  127 ggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataat 193  Q
    |||||||||||||||||| ||||||||| |  |||||||||||||||   | |||||||||||||||    
T  19604462 ggtaactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataat 19604528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 36255446 - 36255372
Alignment:
Q  118 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 192  Q
    ||||| |||| || |||| ||||| |||||||||||| | |||||||||||||||| ||||||| | ||||||||    
T  36255446 gaagattttgatagctaactttaatgagttgagtccaagactcttcaactccaaatttttccattttccatataa 36255372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 29106888 - 29106823
Alignment:
Q  124 tttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccata 189  Q
    ||||||||||||||||||  ||||||||||| | ||||||||| |||||| | | |||||||||||    
T  29106888 tttggtaactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccata 29106823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 36263119 - 36263059
Alignment:
Q  132 ctaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 192  Q
    |||| ||||| |||||||||||| | ||||||||||||||||  |||||||| ||||||||    
T  36263119 ctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataa 36263059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 660848 - 660911
Alignment:
Q  129 taactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 192  Q
    |||||||||||||||| ||||||||| | ||||||||||| ||||   | ||||||||||||||    
T  660848 taactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataa 660911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 18997588 - 18997660
Alignment:
Q  118 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatat 190  Q
    |||||||| ||||||||||||||||||  |||||||| | ||  ||||||||||||   | ||||||||||||    
T  18997588 gaagagttaggtaactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatat 18997660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 20352164 - 20352120
Alignment:
Q  129 taactaattttaaggagttgagtccatggctcttcaactccaaat 173  Q
    |||||||||||||  |||||||||||||  |||||||||||||||    
T  20352164 taactaattttaaaaagttgagtccatgaatcttcaactccaaat 20352120  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 35767083 - 35767024
Alignment:
Q  133 taattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 192  Q
    ||||||||||||||||| |||| | ||||||||||||||||  |||||||| ||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataa 35767024  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 3560959 - 3561033
Alignment:
Q  129 taactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattcggtt 203  Q
    |||||||||||||| | ||||||||| | ||||||||| |||||| ||| ||||||||| ||||| || ||||||    
T  3560959 taactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtt 3561033  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 183
Target Start/End: Complemental strand, 19359308 - 19359152
Alignment:
Q  27 ttagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagttt 126  Q
    ||||||||||| ||||||||    |||||||||||||| ||||| ||| ||| | ||  |||||||||  |||| ||| ||  | || |  ||||| |||    
T  19359308 ttagccaatatgagtgtatcaccatgatcagaaaggtgaaatggtaaccatttagaaagtttcaagtcaacaaagtcacgatgtatactctgaagatttt 19359209  T
Q  127 ggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatct 183  Q
    | || ||||||||||  ||||||||||| | ||||||||||||||||  ||||||||    
T  19359208 gatacctaattttaataagttgagtccaagactcttcaactccaaattcttccatct 19359152  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 53774909 - 53774865
Alignment:
Q  129 taactaattttaaggagttgagtccatggctcttcaactccaaat 173  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||    
T  53774909 taactaattttaaggaattgagtccaagactcttcaactccaaat 53774865  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 3565813 - 3565739
Alignment:
Q  129 taactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattcggtt 203  Q
    |||||||||||||| | ||||||||| | ||||||||| ||||||   | ||||||||||||||| || ||||||    
T  3565813 taactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggtt 3565739  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 19361522 - 19361448
Alignment:
Q  118 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 192  Q
    ||||| |||| || |||||||||| ||||||||||||   |||||||||| |||||  |||||||| ||||||||    
T  19361522 gaagattttgatacctaattttaatgagttgagtccaaaactcttcaacttcaaattattccatcttccatataa 19361448  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 4014963 - 4015029
Alignment:
Q  126 tggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 192  Q
    |||||||||| |||||||| ||||||||| |  |||||||| |||||| | | ||||||||||||||    
T  4014963 tggtaactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataa 4015029  T

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