View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4330_low_13 (Length: 239)
Name: NF4330_low_13
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330_low_13 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0169 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 7083897 - 7084135
Alignment:
| Q |
1 |
tgcatcaacccatggggtttcgggatccgaatcttcctaatcatgtatgcttgttnnnnnnntctctatatgggctcaaacaggcccctcgggcttggta |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7083897 |
tgcatcaacccatggggtttagggatccgaatcttcctaatcatgtatgcttgttaaagaaatctctatatgggctcaaacaggcccctcgggcttggta |
7083996 |
T |
|
| Q |
101 |
caagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggtacagctatggcttacatt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7083997 |
caagagatttgctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggtacagctatggcttacatt |
7084096 |
T |
|
| Q |
201 |
cttttatatgtggatgatattatactgacaacctcctct |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7084097 |
cttttatatgtggatgatattatactgacagcctcctct |
7084135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1852786 - 1853024
Alignment:
| Q |
1 |
tgcatcaacccatggggtttcgggatccgaatcttcctaatcatgtatgcttgttnnnnnnntctctatatgggctcaaacaggcccctcgggcttggta |
100 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1852786 |
tgcatcaacccctggggtttagggatccaaatcttcctaatcatgtatgcttgttaaagaaatctctatatgggctcaaacaggcccctcgggcttggta |
1852885 |
T |
|
| Q |
101 |
caagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggtacagctatggcttacatt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
1852886 |
caagagatttgctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggcacaactatggcttacatt |
1852985 |
T |
|
| Q |
201 |
cttttatatgtggatgatattatactgacaacctcctct |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1852986 |
cttttatatgtggatgatattatactgacagcctcctct |
1853024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 36649235 - 36649473
Alignment:
| Q |
1 |
tgcatcaacccatggggtttcgggatccgaatcttcctaatcatgtatgcttgttnnnnnnntctctatatgggctcaaacaggcccctcgggcttggta |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36649235 |
tgcatcaacccatggggtttagggatccaaatcttcctaatcatgtatgcttgttaaagaaatctctatatgggctcaaacaggcccctcgggcttggta |
36649334 |
T |
|
| Q |
101 |
caagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggtacagctatggcttacatt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
36649335 |
caagagatttgctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccagaaaggcacaactatggcttacatt |
36649434 |
T |
|
| Q |
201 |
cttttatatgtggatgatattatactgacaacctcctct |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36649435 |
cttttatatgtggatgatattatactgacagcctcctct |
36649473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 223
Target Start/End: Original strand, 18392563 - 18392719
Alignment:
| Q |
67 |
tatatgggctcaaacaggcccctcgggcttggtacaagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctt |
166 |
Q |
| |
|
||||||| || |||||||| ||| | ||||||| || ||||| | |||||||||| | | |||||||||||||| || | || ||||| |||||||| |
|
|
| T |
18392563 |
tatatggtctaaaacaggctcctagaacttggtataaacgatttgcagattatgtttattcaattggtttttctcaaagaaattgtgatcactctctctt |
18392662 |
T |
|
| Q |
167 |
tatttaccggaaaggtacagctatggcttacattcttttatatgtggatgatattat |
223 |
Q |
| |
|
||| ||| ||||||||| ||| |||||| | || |||||||||||||||||||| |
|
|
| T |
18392663 |
tatctacaagaaaggtactcatatagcttacctcctcttatatgtggatgatattat |
18392719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 21617 - 21855
Alignment:
| Q |
1 |
tgcatcaacccatggggtttcgggatccgaatcttcctaatcatgtatgcttgttnnnnnnntctctatatgggctcaaacaggcccctcgggcttggta |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21617 |
tgcatcaacccatggggtttagggatccaaatcttcctaatcatgtatgcttgttaaagaaatctctatatgggctcaaacaggaacctcgggcttggta |
21716 |
T |
|
| Q |
101 |
caagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggtacagctatggcttacatt |
200 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
21717 |
caagagatttgctgattatgtttatactattggtttttctcacagtacttcggatcattctctctttatttaccagaaaggtacatctatggcttacatt |
21816 |
T |
|
| Q |
201 |
cttttatatgtggatgatattatactgacaacctcctct |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21817 |
cttttatatgtggatgatattatactgacagcctcctct |
21855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 223
Target Start/End: Original strand, 28080644 - 28080800
Alignment:
| Q |
67 |
tatatgggctcaaacaggcccctcgggcttggtacaagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctt |
166 |
Q |
| |
|
||||||| || |||||||| ||| | |||||||||| ||||| | |||||||||||| | ||||| || ||||| || | || ||||| |||||||| |
|
|
| T |
28080644 |
tatatggtctaaaacaggctcctagaacttggtacaaacgatttgcagattatgtttcttcaattggcttctctcaaagcaattgtgatcactctctctt |
28080743 |
T |
|
| Q |
167 |
tatttaccggaaaggtacagctatggcttacattcttttatatgtggatgatattat |
223 |
Q |
| |
|
|| ||| |||||| || ||| |||||| | || |||||||||||||||||||| |
|
|
| T |
28080744 |
tagctacaagaaaggcactcatatagcttacctcctcttatatgtggatgatattat |
28080800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University