View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4330_low_2 (Length: 461)

Name: NF4330_low_2
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4330_low_2
NF4330_low_2
[»] chr8 (1 HSPs)
chr8 (16-442)||(29157264-29157690)
[»] chr2 (9 HSPs)
chr2 (285-442)||(2596223-2596380)
chr2 (285-442)||(2581534-2581691)
chr2 (127-244)||(2583668-2583785)
chr2 (71-200)||(2596498-2596628)
chr2 (312-442)||(2589148-2589278)
chr2 (220-289)||(2596431-2596500)
chr2 (181-242)||(2584987-2585051)
chr2 (235-289)||(2581743-2581797)
chr2 (369-414)||(2584824-2584869)
[»] chr7 (2 HSPs)
chr7 (71-253)||(46769773-46769964)
chr7 (326-414)||(46769615-46769703)
[»] chr3 (2 HSPs)
chr3 (337-442)||(21642431-21642536)
chr3 (341-442)||(21620765-21620866)
[»] chr6 (1 HSPs)
chr6 (309-430)||(30399351-30399472)
[»] chr4 (2 HSPs)
chr4 (369-431)||(35767245-35767307)
chr4 (369-414)||(19359417-19359462)


Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 29157690 - 29157264
Alignment:
Q  16 tcaactaagaagaataggctttccatagacatatacccatgacatgacacaaaccacaattacataaaagaaacaaggaaaaactgaaagttgaatggtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157690 tcaactaagaagaataggctttccatagacatatacccatgacatgaaacaaaccacaattacataaaagaaacaaggaaaaactgaaagttgaatggtt 29157591  T
Q  116 gaattggatgaaaaattagaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaa 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157590 gaattggatgaaaaattaaaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaa 29157491  T
Q  216 acaaacagaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaagctattgcagcaccaaaagcctcctt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| ||    
T  29157490 acaaacagaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaagaaacctaaagctattgcagcaccaaaaagctcatt 29157391  T
Q  316 tcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattg 415  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157390 tcttcctttcctccaatcatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattg 29157291  T
Q  416 gatcgatagttctagtccgctttgctg 442  Q
    |||||||| ||||||||| ||||||||    
T  29157290 gatcgataattctagtcctctttgctg 29157264  T

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Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 285 - 442
Target Start/End: Complemental strand, 2596380 - 2596223
Alignment:
Q  285 ctaaagctattgcagcaccaaaagcctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttca 384  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||     
T  2596380 ctaaagctattgtagcaccaaaaagctcctttcttcctttcctccaaccatcccataaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcg 2596281  T
Q  385 acaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttgctg 442  Q
    ||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  2596280 acataaaccttggcagagaaccattgtatttcatcgataattctagtccgctttgctg 2596223  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 285 - 442
Target Start/End: Complemental strand, 2581691 - 2581534
Alignment:
Q  285 ctaaagctattgcagcaccaaaagcctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttca 384  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  2581691 ctaaagctattgtagcaccaaaaagctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgtcagaaaccaagctttca 2581592  T
Q  385 acaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttgctg 442  Q
    ||| |||||||| || ||||||||| ||||  || |||| ||||||||||||||||||    
T  2581591 acataaaccttgacaaagaaccattctatttcatggataattctagtccgctttgctg 2581534  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 2583785 - 2583668
Alignment:
Q  127 aaaattagaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaacagaag 226  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  2583785 aaaattaaaagagagatggcatgtaaataaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatgtttccaaacaaagagaag 2583686  T
Q  227 agttataaaacaaaacaa 244  Q
    ||||| ||||||||||||    
T  2583685 agttacaaaacaaaacaa 2583668  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 2596628 - 2596498
Alignment:
Q  71 acaattacat-aaaagaaacaaggaaaaactgaaagttgaatggttgaattggatgaaaaattagaagagagatggcatgtaaagaaatgaataaggaaa 169  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| ||||||| |||||||    
T  2596628 acaattacattaaaagaaacatggaaaaactgaaagtcgaatggttgaattggatgaaaaattaaaagagagatagaatgtaaaaaaatgaacaaggaaa 2596529  T
Q  170 aggactaaaatgcataaatgtattagtgaca 200  Q
    |||| | ||| ||||||||||||||||||||    
T  2596528 aggatttaaaggcataaatgtattagtgaca 2596498  T

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Target: chr2; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 312 - 442
Target Start/End: Complemental strand, 2589278 - 2589148
Alignment:
Q  312 cctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgt 411  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||| ||||||||| |||||||||||||    
T  2589278 cctttctttttttcctctaaccatcccacaaatgtcttgacgtgctttctaaatatcagaaaccaaactttcaacataaaccttggtagagaaccattgt 2589179  T
Q  412 attggatcgatagttctagtccgctttgctg 442  Q
    |||  || |||| ||||||||||||||||||    
T  2589178 atttcattgataattctagtccgctttgctg 2589148  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 2596500 - 2596431
Alignment:
Q  220 acagaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaa 289  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  |||| |||||||||    
T  2596500 acagaagagttataaaacaaaacaattattacattgtgagttgcttcaaatgtcttcgaagaaacctaaa 2596431  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 2585051 - 2584987
Alignment:
Q  181 gcataaatgtattagtgacattcacatggttccaaacaaacag---aagagttataaaacaaaac 242  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||   |||||||||||||||||||    
T  2585051 gcataaatgaattagtgacatttacatgtttccaaacaaacagaagaagagttataaaacaaaac 2584987  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 2581797 - 2581743
Alignment:
Q  235 aacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaa 289  Q
    ||||||| |||||||||||||||||||||||| ||||||  |||| |||||||||    
T  2581797 aacaaaaaaattattaaattgtgagttgcttcaaatgtcttcgaagaaacctaaa 2581743  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 2584869 - 2584824
Alignment:
Q  369 agaaaccaagctttcaacaaaaaccttggcagagaaccattgtatt 414  Q
    ||||||||| ||||||||| || ||||| |||||||||||||||||    
T  2584869 agaaaccaaactttcaacataagccttgacagagaaccattgtatt 2584824  T

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Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 46769964 - 46769773
Alignment:
Q  71 acaattacataaaagaaacaaggaaaaactgaaa-gttgaatggttgaattggatgaaaaattaga-----agagagatggcatgtaaagaaatgaataa 164  Q
    ||||||||||  |||||| ||||||||||||||| |||||||| |||||||||||| ||||||| |     | ||||||| ||| |||||||||||||||    
T  46769964 acaattacattgaagaaagaaggaaaaactgaaaagttgaatgattgaattggatgtaaaattaaattaaaatagagatgacatataaagaaatgaataa 46769865  T
Q  165 ggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaacag---aagagttataaaacaaaacaattattaaat 253  Q
    ||| | ||||||||| ||||||||||| ||||||||| |||||| ||||||||||||||   |||||||||||||||||| |||||||||||    
T  46769864 ggatatggactaaaaggcataaatgtactagtgacatccacatgcttccaaacaaacagaagaagagttataaaacaaaataattattaaat 46769773  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 414
Target Start/End: Complemental strand, 46769703 - 46769615
Alignment:
Q  326 ctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtatt 414  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||| || ||||||||  ||||||||||||||||||| ||||||    
T  46769703 ctccagccatcccacaaatgtcttgacatgctttctaaatgtaagaaacaaaactttcaacgtaaaccttggcagagaaccaatgtatt 46769615  T

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Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 337 - 442
Target Start/End: Original strand, 21642431 - 21642536
Alignment:
Q  337 ccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgct 436  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  21642431 ccacaaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaaccattgtatttcatcgataattctagtccgct 21642530  T
Q  437 ttgctg 442  Q
    ||||||    
T  21642531 ttgctg 21642536  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 341 - 442
Target Start/End: Original strand, 21620765 - 21620866
Alignment:
Q  341 aaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttgc 440  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  21620765 aaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaaccattgtatttcatcgataattctagtccgctttgc 21620864  T
Q  441 tg 442  Q
    ||    
T  21620865 tg 21620866  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 309 - 430
Target Start/End: Complemental strand, 30399472 - 30399351
Alignment:
Q  309 cctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccat 408  Q
    ||||| ||||||||||| || ||||| | |||||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| ||||||||||    
T  30399472 cctccattcttcctttcatctaaccagcgcacaaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggtagagaaccat 30399373  T
Q  409 tgtattggatcgatagttctag 430  Q
    ||||||  ||||||| ||||||    
T  30399372 tgtatttcatcgataattctag 30399351  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 431
Target Start/End: Complemental strand, 35767307 - 35767245
Alignment:
Q  369 agaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagttctagt 431  Q
    ||||||||||||||| ||| ||||||||| ||||||||| ||||||  |||  ||||||||||    
T  35767307 agaaaccaagctttcgacataaaccttggtagagaaccagtgtattctatcagtagttctagt 35767245  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 19359462 - 19359417
Alignment:
Q  369 agaaaccaagctttcaacaaaaaccttggcagagaaccattgtatt 414  Q
    ||||||||||||||||||| || ||||| |||||||||||| ||||    
T  19359462 agaaaccaagctttcaacataagccttgacagagaaccattttatt 19359417  T

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