View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4330_low_4 (Length: 427)

Name: NF4330_low_4
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4330_low_4
NF4330_low_4
[»] scaffold0386 (3 HSPs)
scaffold0386 (334-419)||(1149-1234)
scaffold0386 (219-289)||(1279-1349)
scaffold0386 (235-282)||(692-739)
[»] chr4 (6 HSPs)
chr4 (334-419)||(33878719-33878804)
chr4 (219-289)||(33878604-33878674)
chr4 (218-278)||(33879209-33879269)
chr4 (1-41)||(33878563-33878603)
chr4 (219-282)||(46673425-46673488)
chr4 (219-282)||(46674115-46674178)
[»] chr8 (5 HSPs)
chr8 (334-419)||(38460526-38460611)
chr8 (216-277)||(38460408-38460469)
chr8 (231-282)||(38460882-38460933)
chr8 (218-282)||(44428350-44428414)
chr8 (219-282)||(44427662-44427725)
[»] chr5 (6 HSPs)
chr5 (334-419)||(13869339-13869424)
chr5 (219-289)||(13869220-13869290)
chr5 (219-289)||(27640855-27640925)
chr5 (334-419)||(27640973-27641058)
chr5 (231-282)||(13869827-13869878)
chr5 (231-282)||(27641431-27641482)
[»] chr7 (9 HSPs)
chr7 (334-419)||(29735576-29735661)
chr7 (219-282)||(29735101-29735164)
chr7 (219-289)||(29735710-29735787)
chr7 (219-282)||(8704980-8705043)
chr7 (219-282)||(8721244-8721307)
chr7 (75-161)||(16666509-16666594)
chr7 (75-161)||(17640879-17640964)
chr7 (96-149)||(16684881-16684934)
chr7 (96-149)||(17659117-17659170)
[»] chr3 (3 HSPs)
chr3 (334-419)||(49851284-49851369)
chr3 (219-289)||(49851417-49851487)
chr3 (233-282)||(49850833-49850882)


Alignment Details
Target: scaffold0386 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 1234 - 1149
Alignment:
Q  334 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgatgatg 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  1234 gagttttctttctcttctctttgcttaaacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatg 1149  T

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Target: scaffold0386; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 1349 - 1279
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgataggtca 289  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  1349 gagaaatacttgcatagaaacgtacataacatgtgacacttacaaacatccaataaaatcatgacaggtca 1279  T

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Target: scaffold0386; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 692 - 739
Alignment:
Q  235 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  692 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 739  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 334 - 419
Target Start/End: Original strand, 33878719 - 33878804
Alignment:
Q  334 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgatgatg 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  33878719 gagttttctttctcttctctttgcttaaacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatg 33878804  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 33878604 - 33878674
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgataggtca 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33878604 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacaggtca 33878674  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 33879269 - 33879209
Alignment:
Q  218 tgagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatc 278  Q
    ||||||||  || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33879269 tgagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatc 33879209  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33878563 - 33878603
Alignment:
Q  1 attatatacatgtttatattcttcaaagaccgtatttacta 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33878563 attatatacatgtttatattcttcaaagaccgtatttacta 33878603  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 46673425 - 46673488
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    |||||||||||||||| ||||| |||||||| |||||| ||| |||||||| |||||| |||||    
T  46673425 gagaaatacttgcatacaaacgaacataacacgtggcatttagaaacatcctatgaaaacatga 46673488  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 46674178 - 46674115
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    |||||||||||||||| ||||| |||||||| |||||| ||| |||||| |||| ||| |||||    
T  46674178 gagaaatacttgcatacaaacgaacataacacgtggcatttagaaacattcaataaaaacatga 46674115  T

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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 334 - 419
Target Start/End: Original strand, 38460526 - 38460611
Alignment:
Q  334 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgatgatg 419  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  |||||||||||||||||||||| ||||    
T  38460526 gagttttctttctcttctctttgcttaaacctgtggaataagtctagaaactccaaatatctcttgttgtttaaattgtgaagatg 38460611  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 38460408 - 38460469
Alignment:
Q  216 tttgagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaat 277  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38460408 tttgtgaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaat 38460469  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 38460933 - 38460882
Alignment:
Q  231 catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38460933 catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 38460882  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 44428414 - 44428350
Alignment:
Q  218 tgagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||| |||||||| |||||| |||||    
T  44428414 tgagaaatacttgcatataaacgaacataacacgtggcatttagaaacatcctatgaaaacatga 44428350  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 44427662 - 44427725
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    |||||||||||||||| ||||| |||||||| |||||| ||| ||||||||||| ||| |||||    
T  44427662 gagaaatacttgcatacaaacgaacataacacgtggcatttagaaacatccaataaaaacatga 44427725  T

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Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 334 - 419
Target Start/End: Original strand, 13869339 - 13869424
Alignment:
Q  334 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgatgatg 419  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  13869339 gagttttctttctcttctctttgcttaaaccggtggaataattctagaaacgccaaacttctcttgttgtttaaattatgaagatg 13869424  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 13869220 - 13869290
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgataggtca 289  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13869220 gagaaatacttgcatagaagcgtacataacatgtggcacttacaaacatccaatgaaatcatgacaggtca 13869290  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 27640855 - 27640925
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgataggtca 289  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27640855 gagaaatacttgcatagaagcgtacataacatgtggcacttacaaacatccaatgaaatcatgacaggtca 27640925  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 334 - 419
Target Start/End: Original strand, 27640973 - 27641058
Alignment:
Q  334 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgatgatg 419  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  27640973 gagttttctttctcttctctttgcttaaactggtggaataattctagaaacgccaaacttctcttgttgtttaaattatgaagatg 27641058  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 13869878 - 13869827
Alignment:
Q  231 catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13869878 catagaaacgtacataacatgtggcacttacaaacattcaatgaaatcatga 13869827  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 27641482 - 27641431
Alignment:
Q  231 catagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  27641482 catagaaacgtacatatcatgtggcacttacaaacattcaatgaaatcatga 27641431  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 29735661 - 29735576
Alignment:
Q  334 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgatgatg 419  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| | ||||||||||||||||||||| ||||    
T  29735661 gagttttctttctcttctctttgcttaaaccggtggaataattctaaaaatgccaaattcctcttgttgtttaaattgtgaagatg 29735576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 29735101 - 29735164
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  29735101 gagaaattcttacatagaaacttacataacatgtggcacttacaaacatccaataaaattatga 29735164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 29735787 - 29735710
Alignment:
Q  219 gagaaatacttgcatagaaacgtacata-----acatgtggcacttacaaac--atccaatgaaatcatgataggtca 289  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||||  ||||||||||||||||| ||||||    
T  29735787 gagaaatacttgcatagaaacgtacataacataacatgtggcacttacaaacatatccaatgaaatcatgacaggtca 29735710  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 8704980 - 8705043
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    |||||||||||||||| ||||| ||||||||||||||| ||| |||||||| |||||| |||||    
T  8704980 gagaaatacttgcatacaaacgaacataacatgtggcatttagaaacatcctatgaaaacatga 8705043  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 8721307 - 8721244
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    |||||||||||||||| ||||| |||||||| |||||| ||| ||||||||||| ||| |||||    
T  8721307 gagaaatacttgcatacaaacgaacataacacgtggcatttagaaacatccaataaaaacatga 8721244  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 16666594 - 16666509
Alignment:
Q  75 catgaagatgaaaccatataaaatttcaaactatactaacctcacctctaccaagtcgcatcaaatcacaagcacaaatacacttca 161  Q
    ||||||||||||  |||| |||||||||||||||||||||| ||  ||||||   |||||||||| ||||||||| |||| ||||||    
T  16666594 catgaagatgaaggcatacaaaatttcaaactatactaaccgcaattctacc-gttcgcatcaaagcacaagcacgaataaacttca 16666509  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 17640964 - 17640879
Alignment:
Q  75 catgaagatgaaaccatataaaatttcaaactatactaacctcacctctaccaagtcgcatcaaatcacaagcacaaatacacttca 161  Q
    ||||||||||||  |||| |||||||||||||||||||||| ||  ||||||   |||||||||| ||||||||| |||| ||||||    
T  17640964 catgaagatgaaggcatacaaaatttcaaactatactaaccgcaattctacc-gttcgcatcaaagcacaagcacgaataaacttca 17640879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 16684934 - 16684881
Alignment:
Q  96 aatttcaaactatactaacctcacctctaccaagtcgcatcaaatcacaagcac 149  Q
    ||||||||||||||||||||||| || ||| ||| |||| |||| |||||||||    
T  16684934 aatttcaaactatactaacctcaactttacgaagccgcaccaaagcacaagcac 16684881  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 17659170 - 17659117
Alignment:
Q  96 aatttcaaactatactaacctcacctctaccaagtcgcatcaaatcacaagcac 149  Q
    ||||||||||||||||||||||| || ||| ||| |||| |||| |||||||||    
T  17659170 aatttcaaactatactaacctcaactttacgaagccgcaccaaagcacaagcac 17659117  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 49851369 - 49851284
Alignment:
Q  334 gagttttctttctcttctctttgcttaaacctgtggaataattctaaaaactccaaacttctcttgttgtttaaattgtgatgatg 419  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||    
T  49851369 gagttttctttcttttctctttgcttaaactggtggaataattctagaaacgccaaacttcccttgttgtttaaattgtgaagatg 49851284  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 49851487 - 49851417
Alignment:
Q  219 gagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgataggtca 289  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  49851487 gagaaaaacttgcatagaaacatacataacatgtggcacttacaaacatccaatgaaatcataacaggtca 49851417  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 49850833 - 49850882
Alignment:
Q  233 tagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatga 282  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49850833 tagaaacgtacataacatgtggcacttacaaacattcaatgaaatcatga 49850882  T

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