View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4330_low_5 (Length: 398)
Name: NF4330_low_5
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330_low_5 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 385
Target Start/End: Complemental strand, 1853366 - 1853004
Alignment:
| Q |
23 |
atgcatgaataaacatacctgttgcacagcataagcaataccaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatgga |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1853366 |
atgcatgaataaacacacctgttgcacagcataagcaatatcaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatgga |
1853267 |
T |
|
| Q |
123 |
tctgcatatggtgcgctggaattagcactaagcttcggtttagtgtcaaccggagtagaagatgatttacatgttgccatgccagctcgttcaatgatct |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
1853266 |
tctgcatatggtgcgctggaattagcactaagcttcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgatct |
1853167 |
T |
|
| Q |
223 |
cagctgcatactttcgttgagataagaacaatccacctgtatgatgagtgacagcgatacccaagaagtaatgtaatgaccccaaatccttcatagcaaa |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1853166 |
cagctgcatactttcgttgagataagaacaatccacctgtatgatgagttacagcgatacccaagaagtaatgtaatgaccccaaatccttcatagcaaa |
1853067 |
T |
|
| Q |
323 |
ttctgtactaaggagggatatgatagtcatgcgaagagcatcagaggaggttgtcagtataat |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1853066 |
ttctgtactaaggagggatatgatagtcatgcgaagagcatcagaggaggctgtcagtataat |
1853004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 385
Target Start/End: Complemental strand, 36649815 - 36649453
Alignment:
| Q |
23 |
atgcatgaataaacatacctgttgcacagcataagcaataccaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatgga |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36649815 |
atgcatgaataaacacacctgttgcacagcataagcaatatcaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatgga |
36649716 |
T |
|
| Q |
123 |
tctgcatatggtgcgctggaattagcactaagcttcggtttagtgtcaaccggagtagaagatgatttacatgttgccatgccagctcgttcaatgatct |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
36649715 |
tctgcatatggtgcgctggaattagcactaagcttcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgatct |
36649616 |
T |
|
| Q |
223 |
cagctgcatactttcgttgagataagaacaatccacctgtatgatgagtgacagcgatacccaagaagtaatgtaatgaccccaaatccttcatagcaaa |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36649615 |
cagctgcatactttcgttgagataagaacaatccacctgtatgatgagttacagcgatacccaagaagtaatgtaatgaccccaaatccttcatagcaaa |
36649516 |
T |
|
| Q |
323 |
ttctgtactaaggagggatatgatagtcatgcgaagagcatcagaggaggttgtcagtataat |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36649515 |
ttctgtactaaggagggatatgatagtcatgcgaagagcatcagaggaggctgtcagtataat |
36649453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 259
Target Start/End: Complemental strand, 1667923 - 1667730
Alignment:
| Q |
66 |
ggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatggatctgcatatggtgcgctggaattagcactaagcttcggtttag |
165 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||| || || ||||| ||| |||| || | ||| | ||||| |||||||||||||||| |
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|
| T |
1667923 |
ggtctcgtgaaagtgaggtattggagagcaccggcaaggctacggtataatgatgggtcttcatagggagtgctagtcttagcgctaagcttcggtttag |
1667824 |
T |
|
| Q |
166 |
tgtcaaccggagtagaagatgatttacatgttgccatgccagctcgttcaatgatctcagctgcatactttcgttgagataagaacaatccacc |
259 |
Q |
| |
|
||||||| | ||| | | ||||||| |||| || |||||| ||||| | || || ||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
1667823 |
tgtcaactgaagtgggacatgatttgcatgatgacatgcctgctcgcttaagaatttcatctgcatactttttctgagataagaacaaaccacc |
1667730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 325
Target Start/End: Complemental strand, 45181481 - 45181180
Alignment:
| Q |
24 |
tgcatgaataaacatacctgttgcacagcataagcaataccaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatggat |
123 |
Q |
| |
|
||||||||||| |||| |||||| || ||||| | |||| | ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
45181481 |
tgcatgaataagcatatctgttggaccgcatatgaaatatcgggtcttgtaaaagtgagatattgaagagcacctgcaaggctgcgatataaggatggat |
45181382 |
T |
|
| Q |
124 |
ctgcatatggtgcgctggaattagcactaagcttcggtttagtgtcaaccggagtagaagatgatttacatgttgccatgccagctcgttcaatgatctc |
223 |
Q |
| |
|
| ||||||| | ||||| | | ||||| || | ||| ||||||||||| |||| | |||| ||||| | || ||| ||||| ||||||| | ||| |
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|
| T |
45181381 |
cctcatatggagtactggagatggtgctaagttttgatttggtgtcaaccggggtaggacatgacttacaagatgacataccagcacgttcaagcacctc |
45181282 |
T |
|
| Q |
224 |
agctgcatactttcgttgagataagaacaatccacctgtatgatgagtgacagcgatacccaagaagtaatgtaatgaccccaaatccttcatagcaaat |
323 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||| ||| |||| |||| || ||||| || |||| | || |||||||||||||| |||||| |
|
|
| T |
45181281 |
ttctgcatactttttctgagataagaatataccacctgaatgtcgagttacagaaatgcccaaaaaataattaagtggtcccaaatccttcattgcaaat |
45181182 |
T |
|
| Q |
324 |
tc |
325 |
Q |
| |
|
|| |
|
|
| T |
45181181 |
tc |
45181180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 23 - 385
Target Start/End: Complemental strand, 7084477 - 7084115
Alignment:
| Q |
23 |
atgcatgaataaacatacctgttgcacagcataagcaataccaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatgga |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7084477 |
atgcatgaataaacacacctgttgcacagcataagcaatatcaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatgga |
7084378 |
T |
|
| Q |
123 |
tctgcatatggtgcgctggaattagcactaagcttcggtttagtgtcaaccggagtagaagatgatttacatgttgccatgccagctcgttcaatgatct |
222 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
7084377 |
tctgcatgtggtgcgctggaattagcactaagcttcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgattt |
7084278 |
T |
|
| Q |
223 |
cagctgcatactttcgttgagataagaacaatccacctgtatgatgagtgacagcgatacccaagaagtaatgtaatgaccccaaatccttcatagcaaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
7084277 |
cagctgcatactttcgttgagataagaataatccacctgtatgatgagttacagcgatacccaagaagtaatgtaatgaccccaaatccttcatagcgaa |
7084178 |
T |
|
| Q |
323 |
ttctgtactaaggagggatatgatagtcatgcgaagagcatcagaggaggttgtcagtataat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
7084177 |
ttctgtactaaggagggatatgatagtcacgcgaagagcatcagaggaggctgtcagtataat |
7084115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 57 - 385
Target Start/End: Complemental strand, 22163 - 21835
Alignment:
| Q |
57 |
gcaataccaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatggatctgcatatggtgcgctggaattagcactaagct |
156 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22163 |
gcaatatcaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatggatctgcatatggtgcgctggaattagcactaagct |
22064 |
T |
|
| Q |
157 |
tcggtttagtgtcaaccggagtagaagatgatttacatgttgccatgccagctcgttcaatgatctcagctgcatactttcgttgagataagaacaatcc |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22063 |
tcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccatcccgttcaatgatctcagctgcatactttcgttgagataagaacaatcc |
21964 |
T |
|
| Q |
257 |
acctgtatgatgagtgacagcgatacccaagaagtaatgtaatgaccccaaatccttcatagcaaattctgtactaaggagggatatgatagtcatgcga |
356 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21963 |
acctgtatgatgagtttcagcgatacccaagaagtaatgtaatgaccccaaatccttcatagcaaattctgtactaaggagggatatgatagtcatgcga |
21864 |
T |
|
| Q |
357 |
agagcatcagaggaggttgtcagtataat |
385 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
21863 |
agagcatcagaggaggctgtcagtataat |
21835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 259
Target Start/End: Complemental strand, 16092220 - 16092027
Alignment:
| Q |
66 |
ggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatggatctgcatatggtgcgctggaattagcactaagcttcggtttag |
165 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||| ||||| |||| ||| |||| || | ||| | || || ||||||||| |||||| |
|
|
| T |
16092220 |
ggtctcgtgaaagtgaggtattggagagcaccgacaaggctacgatataattatgggtcttcatagggagtgctagtcttggcgctaagcttcagtttag |
16092121 |
T |
|
| Q |
166 |
tgtcaaccggagtagaagatgatttacatgttgccatgccagctcgttcaatgatctcagctgcatactttcgttgagataagaacaatccacc |
259 |
Q |
| |
|
||||||||| ||| | | |||||| |||| || |||||| ||||| |||| || ||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
16092120 |
tgtcaaccgaagtgggacgtgatttgcatgatgacatgcctgctcgctcaagaatttcatctacatactttttctgagataagaacaagccacc |
16092027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 348
Target Start/End: Original strand, 4867536 - 4867860
Alignment:
| Q |
24 |
tgcatgaataaacatacctgttgcacagcataagcaataccaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatggat |
123 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||| ||| ||||| || || || ||||||||||| || || || |||||||| ||||| |||| | | |
|
|
| T |
4867536 |
tgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggctgcgatatagagaaaggt |
4867635 |
T |
|
| Q |
124 |
ctgcatatggtgcgctggaattagcactaagcttcggtttagtgtcaaccggagtagaagatgatttacatgttgccatgccagctcgttcaatgatctc |
223 |
Q |
| |
|
|| || |||| | ||| | || || || | ||| |||||||| ||||||| |||| | ||| |||||| | ||||| ||||| || ||||| || || |
|
|
| T |
4867636 |
cttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattccagcacgatcaataatttc |
4867735 |
T |
|
| Q |
224 |
agctgcatactttcgttgagataagaacaatccacctgtatgatgagtgacagcgatacccaagaagtaatgtaatgaccccaaatccttcatagcaaat |
323 |
Q |
| |
|
||||||| ||| ||||| || || || ||||| | |||| | |||||||| |||||||| || |||| || | |||||||| ||||||||||| |
|
|
| T |
4867736 |
ttctgcatattttttctgagacaaaaataagccaccaggatgacgtgtgacagcaatacccaaaaaataattcaacaatcccaaatctttcatagcaaac |
4867835 |
T |
|
| Q |
324 |
tctgtactaaggagggatatgatag |
348 |
Q |
| |
|
|| | ||||||||| |||||||||| |
|
|
| T |
4867836 |
tcggaactaaggagtgatatgatag |
4867860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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