View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330_low_6 (Length: 367)
Name: NF4330_low_6
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 22 - 352
Target Start/End: Complemental strand, 38841640 - 38841310
Alignment:
| Q |
22 |
tgggtgccaacattccttcaacaacaatcgaagaactcgaatacattctcctccatcccgatacgtacataggttcaactgaaaaacacactcaaaatct |
121 |
Q |
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| T |
38841640 |
tgggcgccaacattccttcaaaaacaatcgaagaactcgaacacattctcctccatcccgatacgtacataggttcaactgaaaaacacactcaaaatct |
38841541 |
T |
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| Q |
122 |
atgggtttacgaaaacgaagaaatggttcaccgttctgtttcctacgttcctggactttacaaaatcttcgatgagattctccttgacgccaccaagaga |
221 |
Q |
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| T |
38841540 |
atgggtttacgaaaacgaagaaatggttcaccgttctgtttcctacgttcctggactttacaaaatctttgacgagattctccttgacgccaccaagaga |
38841441 |
T |
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| Q |
222 |
gatccgtccatggattcactcaaagttacaatcgaaccggaagtgaatacagtttcagtttataataatggtgacagtgttccagtagggcttcataagg |
321 |
Q |
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| T |
38841440 |
gatccgtccatggattcgctcaaagttacaatcgaaccggaagggaatacagtttcagtttataataatggtgaaggtgttccagtagggcttcataagg |
38841341 |
T |
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| Q |
322 |
aagagaatgtttatgttcctgaattgttctt |
352 |
Q |
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| T |
38841340 |
aagagaatgtttatgttcctgaattgttctt |
38841310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 9877695 - 9877549
Alignment:
| Q |
57 |
ctcgaatacattctcctccatcccgatacgtacataggttcaactgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttcaccgtt |
156 |
Q |
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| T |
9877695 |
ctcgaacacattctcctccgtcccgatacctacgtcggttcaattgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttaaccgtt |
9877596 |
T |
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| Q |
157 |
ctgtttcctacgttcctggactttacaaaatcttcgatgagattctc |
203 |
Q |
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| T |
9877595 |
caatctcctacgttcccggtctctacaagatcttcgacgagattctc |
9877549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 340
Target Start/End: Complemental strand, 9877523 - 9877403
Alignment:
| Q |
220 |
gagatccgtccatggattcactcaaagttacaatcgaaccggaagtgaatacagtttcagtttataataatggtgacagtgttccagtagggcttcataa |
319 |
Q |
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||||||| ||||||||||| | ||||| || ||||| || || | |||||| ||||| ||||| ||||| |||||| ||||||| || | | ||||| | |
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| T |
9877523 |
gagatccatccatggattcgttgaaagtaacgatcgatcctgaggcgaatacggtttctgtttacaataacggtgacggtgttccggttgagattcatca |
9877424 |
T |
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| Q |
320 |
ggaagagaatgtttatgttcc |
340 |
Q |
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| T |
9877423 |
agaagagaaggtttatgttcc |
9877403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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