View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330_low_7 (Length: 366)
Name: NF4330_low_7
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 11045716 - 11045541
Alignment:
| Q |
18 |
gttataggacgggcggaatacatgggaggttgttgaaatcatgagagtcaaattatgattatccaatcaagacaaggcagttttgctctcgggataaatt |
117 |
Q |
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| T |
11045716 |
gttatagggcgggcggaatacatgggaggttgttgaaatcatgagagtcaaattgtgattatccaatcaagacaca-cagttttgctctcgggataaatt |
11045618 |
T |
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| Q |
118 |
cgcgagtaatggttcacattaagtatcattttcctttacaaaatgaactagggatgaaaaatatatattttcatata |
194 |
Q |
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| T |
11045617 |
cgcgagtaatagttcgctttaagtagcattttcctttacaaaatgatccagggataaaaaatacatattttcatata |
11045541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 217 - 348
Target Start/End: Complemental strand, 11045466 - 11045336
Alignment:
| Q |
217 |
ggccgatcaacaaatttagcatagttttcgtagttttatattttaggccgaactcaatggattatctaaaacattttcaactatatttgggttgaggtta |
316 |
Q |
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| T |
11045466 |
ggccgatcaacaaatttagcatagttttggtagttttatattttaggcctaactcaatggattatct-aaacattttcaactatatttgggttgaggttt |
11045368 |
T |
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| Q |
317 |
gatcaattacatcattgatatgtaattgttga |
348 |
Q |
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| T |
11045367 |
gatcaattacatcattgatatgtaattgttga |
11045336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 20673438 - 20673561
Alignment:
| Q |
28 |
gggcggaatacatgggaggttgttgaaatcatgagagtcaaattatgattatccaatcaagacaaggcagttttgctctcgggataaattcgcgagtaat |
127 |
Q |
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| T |
20673438 |
gggcggaatacatgggatgttgctgaaattatgggagtcaaattgtgattatccaatcaaaacacagcagttttgctctcgggataaattcgtgatgaat |
20673537 |
T |
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| Q |
128 |
ggttcacattaagtatcattttcc |
151 |
Q |
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| T |
20673538 |
ggttcgcattaagtagcattttcc |
20673561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 41155354 - 41155233
Alignment:
| Q |
30 |
gcggaatacatgggaggttgttgaaatcatgagagtcaaattatgattatccaatcaagacaaggcagttttgctctcgggataaattcgcgagtaatgg |
129 |
Q |
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| T |
41155354 |
gcggaatacatgggaggctgtggaaatcatgggaatgaaattgtgattatccaatcaaaacacagcagttttgctctcgggataaattcgggagcaattg |
41155255 |
T |
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| Q |
130 |
ttcacattaagtatcattttcc |
151 |
Q |
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||| | | ||||| |||||||| |
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| T |
41155254 |
ttcgcgtaaagtagcattttcc |
41155233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 6866343 - 6866427
Alignment:
| Q |
68 |
aattatgattatccaatcaagacaaggcagttttgctctcgggataaattcgcgagtaatggttcacattaagtatcattttcct |
152 |
Q |
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| T |
6866343 |
aattatgattatccaatcaaaatatgacagtttttctctcaggatgaattcgcgagtaatgcttcacattaagtagcattttcct |
6866427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 5576018 - 5575905
Alignment:
| Q |
42 |
ggaggttgttgaaatcatgagagtcaaattatgattatccaatcaagacaaggcagttttgctctcgggataaattcgcgagtaatggttcacattaagt |
141 |
Q |
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| T |
5576018 |
ggaggttgcggaaatcatgggagtgaaattgtaattttccaatcaaaacacgacagttttgctctcgggataatttcgtgagtaattgctcgcgttaagt |
5575919 |
T |
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| Q |
142 |
atcattttccttta |
155 |
Q |
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|||||||||||| |
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| T |
5575918 |
tgcattttccttta |
5575905 |
T |
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