View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4330_low_8 (Length: 304)
Name: NF4330_low_8
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 6 - 289
Target Start/End: Complemental strand, 50570081 - 50569798
Alignment:
| Q |
6 |
gtacattatacttttaaatagactagataaaacaagtattgatagtgttccaattaaaatattataacttgccacgaacccaaataatgtagtgagaatg |
105 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50570081 |
gtactttatactttaaaatagactagataaaacaagtattgatagtgttgcaattaaaatattataacttgccacgaacacaaataatgtagtgagaatg |
50569982 |
T |
|
| Q |
106 |
tagccccaattgacacagtagaatttacttgaagtgcaagatacaaatgaaattgagagaaaataggtggtgatgcacaatttgttgtaatgtgtattct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50569981 |
tagccccaattgacacagtagaatttacttgaagtgcaagatacaaatgaaattgagagaaaataggtggtgatgcacaatttgttgtaatgtgtattct |
50569882 |
T |
|
| Q |
206 |
cattaagcaaatgaaggaatgattacaacttatagaaactaacttgctagctaagcaataacaaacttaactaactaactaact |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50569881 |
cattaagcaaatgaaggaatgattacaacttatagaaactaacttgctagctaagcaataacaaacttaactaactaactaact |
50569798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 43468176 - 43468257
Alignment:
| Q |
139 |
gtgcaagatacaaatgaaattgagagaaaataggtggtgatgcacaatttgttgtaatgtgtattctcattaagcaaatgaa |
220 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| || |||||||| || |||||| ||||||||||||||||||||||||||| |
|
|
| T |
43468176 |
gtgcaagatacaaatggaattaagaaaaaagagaaagtgatgcaaaaattgttgcaatgtgtattctcattaagcaaatgaa |
43468257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 21156121 - 21156199
Alignment:
| Q |
17 |
ttttaaatagactagataaaacaagtattgatagtgttccaattaaaatattataacttgccacgaacccaaataatgta |
96 |
Q |
| |
|
|||||| |||||||||||||| || |||||||| | ||||| ||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
21156121 |
ttttaactagactagataaaaaaa-tattgataacataccaataaaaatattagaacttaccacgaacccaaatactgta |
21156199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University