View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330_low_9 (Length: 267)
Name: NF4330_low_9
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 8295236 - 8294979
Alignment:
| Q |
1 |
ttattccaatcgagttcatctcttgacattatcatgctcttatagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgat |
100 |
Q |
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| T |
8295236 |
ttattccaatcgagttcatctcttgacattatcatgctcttatagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgat |
8295137 |
T |
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| Q |
101 |
ccttgtttgtgaccagtttgaacaattcaaagccagtaacccgaggtggcttaacaaatgccgaggtaattatcaaactgtcagagacaagatcttgagt |
200 |
Q |
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| T |
8295136 |
ccttgtttgtgaccagtttgaacaattcaaagccagtaacccgaggtggcttaacaaatgccgaggtaattatcaaactgtcagagacaagatcttgagt |
8295037 |
T |
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| Q |
201 |
ttcaaactccgcattgcagaatgtataaataaagtataactttctcaacgcttcatct |
258 |
Q |
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| T |
8295036 |
ttcaaactccgcattgcagaacgtataaatgaagtataactctctcaacgcttcatct |
8294979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 30156019 - 30155930
Alignment:
| Q |
17 |
catctcttgacattatcatgctcttatagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgt |
106 |
Q |
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| T |
30156019 |
catcccttgacataaccatactcttgtagcaactaacaaaatacaccctatcttccagcttcacattctgccatccaatagaatccttgt |
30155930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 25732848 - 25732995
Alignment:
| Q |
13 |
agttcatctcttgacattatcatgctcttatagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtga |
112 |
Q |
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| T |
25732848 |
agttcatcccttgacattaccatgcttttgcagttactaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcgtgt |
25732947 |
T |
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| Q |
113 |
ccagtttgaacaattcaaagccagtaacccgaggtggcttaacaaatg |
160 |
Q |
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| T |
25732948 |
ccagcttgaacacttcaaagctggtaagcttaggtggcttaacaaatg |
25732995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 25763237 - 25763429
Alignment:
| Q |
13 |
agttcatctcttgacattatcatgctcttatagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtga |
112 |
Q |
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| T |
25763237 |
agttcatctcttgtcattaccatgctgttccaattactaagaaaagccactctatcttcgagcttcacattctgccacccaataggactcttgtttgcgt |
25763336 |
T |
|
| Q |
113 |
ccagtttgaacaattcaaagccagtaacccgaggtggcttaacaaatgccgaggtaattatcaaactgtcagagacaagatcttgagtttcaa |
205 |
Q |
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| T |
25763337 |
ccagcttgaacacttcaaagctggtaacctgaggtggctttgaaaatgctgagatgactttgaaacggtcagagacatgttgttgagtttcaa |
25763429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 25740549 - 25740696
Alignment:
| Q |
13 |
agttcatctcttgacattatcatgctcttatagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtga |
112 |
Q |
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|||||||| |||| || || |||||| || | |||||||||||| | || ||||||||||||||||||||| |||| ||||| || ||| |||||| |
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| T |
25740549 |
agttcatcccttgccaataccatgcttttccaattactaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttatttgtgt |
25740648 |
T |
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| Q |
113 |
ccagtttgaacaattcaaagccagtaacccgaggtggcttaacaaatg |
160 |
Q |
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| T |
25740649 |
ccagcttgaacacttcaaagctggtaagcttaggtggcttaacaaatg |
25740696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 25746731 - 25746837
Alignment:
| Q |
16 |
tcatctcttgacattatcatgctcttatagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtgacca |
115 |
Q |
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||||| |||||||||| |||||| || | |||||||||||| | || ||||||||||| |||||||||||||| ||||| || |||||| ||| ||| |
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| T |
25746731 |
tcatcccttgacattaccatgcttttgcatttactaacaaaagccactttatcttccagcgtcacattcttccacccaataggactcttgttcgtgtcca |
25746830 |
T |
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| Q |
116 |
gtttgaa |
122 |
Q |
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| T |
25746831 |
gcttgaa |
25746837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 25755290 - 25755482
Alignment:
| Q |
13 |
agttcatctcttgacattatcatgctcttatagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtga |
112 |
Q |
| |
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|||||||| ||||| |||| |||||||||| || ||||| |||||| || |||| |||||| ||||||||| |||| |||| || ||| || ||| |
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| T |
25755290 |
agttcatcccttgatattaccatgctcttacagcaactaagaaaaaccactttatcatccagcctcacattctgccacccaatcggactcttattcgtgt |
25755389 |
T |
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| Q |
113 |
ccagtttgaacaattcaaagccagtaacccgaggtggcttaacaaatgccgaggtaattatcaaactgtcagagacaagatcttgagtttcaa |
205 |
Q |
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|||| ||||||| |||||||| ||||| ||||||||||| || |||| || |||| | |||| ||| ||||||| | ||||||||||| |
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| T |
25755390 |
ccagcttgaacacttcaaagcaggtaacatgaggtggcttagcatatgctaagataatactgaaacggtcggagacaacacgttgagtttcaa |
25755482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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