View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4331_high_3 (Length: 357)
Name: NF4331_high_3
Description: NF4331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4331_high_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 54895026 - 54894687
Alignment:
| Q |
18 |
gataagattgttagaaatgagtataatccagcaactgcttatgcatttggtatagttttgatatattcattttcttggattttatttagttggaaattga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54895026 |
gataagattgttagaaatgagtataatccagcaactgcttatgcatttggtatagttttgatatattcattttcttggattttatttagttggaaattga |
54894927 |
T |
|
| Q |
118 |
ttattgtttttagtttagtttagtaatgataaattgtggatgataatttttaacagatagagtatttggaccacataccgtatccgacgaggtgtatgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54894926 |
ttattgtttttagtttagtttagtaatgataaattgtggatgataatttttaacagatagagtatttggaccacataccgtatccgacgaggtgtatgaa |
54894827 |
T |
|
| Q |
218 |
gtagctgccaaacctgtggtgaaggctgccatggaaggtgtcaatggtatgaaatgctaattctggaattgaggctaatttagaagtgttgtgtgagtag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54894826 |
gtagctgccaaacctgtggtgaaggctgccatggaaggtgtcaatggtatgaaatgctaattctggaattgaggctaatttagaagtgttgtgtgagtag |
54894727 |
T |
|
| Q |
318 |
agtttgattttgattttgtactaccaagcaccaagccatt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54894726 |
agtttgattttgattttgtactaccaagcaccaagccatt |
54894687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 26859015 - 26858920
Alignment:
| Q |
171 |
cagatagagtatttggaccacataccgtatccgacgaggtgtatgaagtagctgccaaacctgtggtgaaggctgccatggaaggtgtcaatggta |
266 |
Q |
| |
|
|||||| |||||||||||| ||||| || || ||||||||||||||||| || |||||||| |||||||| ||||||||||| || ||||||| |
|
|
| T |
26859015 |
cagataaagtatttggaccgcatacaaattcggatgaggtgtatgaagtagcagcaaaacctgtcgtgaaggcagccatggaaggggttaatggta |
26858920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 26859360 - 26859309
Alignment:
| Q |
18 |
gataagattgttagaaatgagtataatccagcaactgcttatgcatttggta |
69 |
Q |
| |
|
||||||||||| || ||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
26859360 |
gataagattgtgaggaatgagtttaatccagctactgcttatgcttttggta |
26859309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University