View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4331_high_6 (Length: 248)
Name: NF4331_high_6
Description: NF4331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4331_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 1006859 - 1006619
Alignment:
| Q |
7 |
cttccgatcactaaagaggattagtcccacaaaagcaactccgctagtgtgagattagaggtttccacttgccatgttcttttgtttgcgtttcatgttg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1006859 |
cttccgatcactaaagaggattagtcccgcaaaagcaactccgctagtgtgagattagaggtttccacttgccatgttcttttgtttgcgtttcatgttg |
1006760 |
T |
|
| Q |
107 |
cccccataaaggaatttctcacagtcctcgactccaattcttgtaaactcttttacaagtgctttcatacgttcagccaatgaagtattataatactcta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1006759 |
cccccataaaggaatttctcacagtcctcgactccaattcttgtaaactcttttacaagtgctttcatacgttcagccaatgaagtattataatactcta |
1006660 |
T |
|
| Q |
207 |
agacggcttggtccgttgctgccattcttaccatcctttgc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1006659 |
agacggcttggtccgttgctgccattcttaccatcctttgc |
1006619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 1451672 - 1451611
Alignment:
| Q |
138 |
ctccaattcttgtaaactcttttacaagtgctttcatacgttcagccaatgaagtattataa |
199 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
1451672 |
ctccaattcttataaactctttgacaatcgctttcatacgttcagccaatgaactattataa |
1451611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 52474926 - 52474802
Alignment:
| Q |
80 |
atgttcttttgtttgcgtttcatgttgcccccataaaggaatttctcacagtcctcgactccaattcttgtaaactcttttacaagtgctttcatacgtt |
179 |
Q |
| |
|
||||||||||||| |||||| |||||| || |||||||||||||||||| |||| |||||| |||| |||||||||| ||||| |||| || ||||| |
|
|
| T |
52474926 |
atgttcttttgttcacgtttcctgttgcacc-ataaaggaatttctcacactccttagctccaaatcttataaactctttgacaagcgcttgcaaacgtt |
52474828 |
T |
|
| Q |
180 |
cagccaatgaagtattataatactct |
205 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
52474827 |
cagccaataaactattataacactct |
52474802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 38791958 - 38792017
Alignment:
| Q |
116 |
aggaatttctcacagtcctcgactccaattcttgtaaactcttttacaagtgctttcata |
175 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||||| |||||||||| |||| |
|
|
| T |
38791958 |
aggaatttctcacagttcttagctccaattcttataaactctttgacaagtgcttccata |
38792017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University