View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4331_high_7 (Length: 241)
Name: NF4331_high_7
Description: NF4331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4331_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33858422 - 33858651
Alignment:
| Q |
1 |
atttgaatgtttgtaacagtataagtatgccaaccactccaatcctaactataaaaagactgggaaaaatactttgaagttccaattgatcaatcaacgt |
100 |
Q |
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| T |
33858422 |
atttgaatttttgtaacagtataagtatgccaaccactccaatcctaactataaaaagactgggaaaaatactttgaagttccaattgatcaatcaacgt |
33858521 |
T |
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| Q |
101 |
gcagatttctcttttgcattattttcaggtggattatccaatgtaagtcatatcttctgatcttgttatttggcatcttcaannnnnnncttgctaaatt |
200 |
Q |
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| T |
33858522 |
gcagatttctcttttgcattattttcaggtggattatccaatgtaagtcatatcttctgatcttgttatttggtatcttcaatttttttcttgctaaatt |
33858621 |
T |
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| Q |
201 |
tgcaatgccaacagtgttttatttcttctt |
230 |
Q |
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| T |
33858622 |
tgcaatgccaacagtgttttatttcttctt |
33858651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 33873289 - 33873431
Alignment:
| Q |
40 |
caatcctaactataaaaagactgggaaaaatactttgaagttccaattgatcaatcaacgtgcagatttctcttttgcattattttcaggtggattatcc |
139 |
Q |
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| T |
33873289 |
caatcctaaatattaaaagactgggaaaactactttgaagttccaatcgatcaatcaacgtgcagatttctcctttgcactactttcaggtggattatcc |
33873388 |
T |
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| Q |
140 |
aatgtaagtcatatcttctgatcttgttatttggcatcttcaa |
182 |
Q |
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| T |
33873389 |
aatgtaagtcatatctactgatcttgttttttggtatcttcaa |
33873431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 33868805 - 33868935
Alignment:
| Q |
28 |
tgccaaccactccaatcctaactataaaaagactgggaaaaatactttgaagttcc-aattgatcaatcaacgtgcagatttctcttttgcattattttc |
126 |
Q |
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| T |
33868805 |
tgccaaccactccaatcctaaatacaaaaagacaggaaaaaatactttgaagttttgaattgatcaatcaacgtgcagatttctcttttgcattattttc |
33868904 |
T |
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| Q |
127 |
aggtggattatccaatgtaagtcatatcttc |
157 |
Q |
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| T |
33868905 |
aggtggattatccaatgtaagtcatttcttc |
33868935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 42781595 - 42781638
Alignment:
| Q |
86 |
ttgatcaatcaacgtgcagatttctcttttgcattattttcagg |
129 |
Q |
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| T |
42781595 |
ttgatcaatcaacgtgcagatttctcctttgcgctattttcagg |
42781638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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