View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4331_high_8 (Length: 239)

Name: NF4331_high_8
Description: NF4331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4331_high_8
NF4331_high_8
[»] chr7 (6 HSPs)
chr7 (1-226)||(1419098-1419326)
chr7 (12-89)||(35979132-35979209)
chr7 (12-89)||(36000544-36000621)
chr7 (16-87)||(45312206-45312277)
chr7 (38-80)||(22116356-22116398)
chr7 (38-80)||(40578875-40578917)
[»] chr3 (1 HSPs)
chr3 (1-80)||(40275792-40275871)
[»] chr5 (1 HSPs)
chr5 (19-87)||(27356517-27356585)
[»] chr6 (1 HSPs)
chr6 (17-78)||(9559110-9559171)
[»] chr4 (1 HSPs)
chr4 (15-72)||(7100487-7100544)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1419326 - 1419098
Alignment:
Q  1 cacactgcattgtctcgggttcaaacccaggtgaaggcgtccaacctaacaatttcaacattgtcagttgagctaggcttcacagacttatgctaggctt 100  Q
    |||||||||||||||||||||||  |||  ||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  1419326 cacactgcattgtctcgggttca--cccgagtgaaggcgtctaacctaacaatttcaacattgccagttgagctaggcttcagggacttatgctaggctt 1419229  T
Q  101 tattatttgtactaaattacattcttagagttattatattttacataaattgttttttgtttta-----aagaaatcaaactaacatacaaaaattgaaa 195  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      ||| |||||||||||||||||||||||||||    
T  1419228 tactatttgtactaaattacattcttagagttattatattttacacaaattgttttttgttttgttttgaagcaatcaaactaacatacaaaaattgaaa 1419129  T
Q  196 ccagagggaatcaaatataatacctgagatg 226  Q
     || | ||||||||||||||||||| |||||    
T  1419128 tcaaaaggaatcaaatataataccttagatg 1419098  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 35979132 - 35979209
Alignment:
Q  12 gtctcgggttcaaacccaggtgaaggcgtccaacctaacaatttcaacattgtcagttgagctaggcttcacagactt 89  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||| ||||| || |||||    
T  35979132 gtctcgggttcaaactcaggtgaaggcgttcaacctaacaatttcatcattgccagttgagcttggctttacggactt 35979209  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 36000544 - 36000621
Alignment:
Q  12 gtctcgggttcaaacccaggtgaaggcgtccaacctaacaatttcaacattgtcagttgagctaggcttcacagactt 89  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||| ||||| || |||||    
T  36000544 gtctcgggttcaaactcaggtgaaggcgttcaacctaacaatttcatcattgccagttgagcttggctttacggactt 36000621  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 45312277 - 45312206
Alignment:
Q  16 cgggttcaaacccaggtgaaggcgtccaacctaacaatttcaacattgtcagttgagctaggcttcacagac 87  Q
    ||||||| ||||  |||||||| ||||||||||||||||||  ||||||||||||||||| |||| ||||||    
T  45312277 cgggttcgaacctgggtgaaggtgtccaacctaacaatttcggcattgtcagttgagctatgctttacagac 45312206  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 22116356 - 22116398
Alignment:
Q  38 cgtccaacctaacaatttcaacattgtcagttgagctaggctt 80  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||    
T  22116356 cgtctaacctaacaattttaacattgtcagttgaactaggctt 22116398  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 40578875 - 40578917
Alignment:
Q  38 cgtccaacctaacaatttcaacattgtcagttgagctaggctt 80  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||    
T  40578875 cgtctaacctaacaattttaacattgtcagttgaactaggctt 40578917  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 40275871 - 40275792
Alignment:
Q  1 cacactgcattgtctcgggttcaaacccaggtgaaggcgtccaacctaacaatttcaacattgtcagttgagctaggctt 80  Q
    |||||||||  ||||||| ||||||  ||| |||| ||||| |||||||||||||  |||||||||||||||||||||||    
T  40275871 cacactgcaaggtctcggattcaaatacagatgaatgcgtctaacctaacaattttgacattgtcagttgagctaggctt 40275792  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 27356585 - 27356517
Alignment:
Q  19 gttcaaacccaggtgaaggcgtccaacctaacaatttcaacattgtcagttgagctaggcttcacagac 87  Q
    |||| ||||||||| |||||||||||||||||||||||  ||||| || || |||||||||| ||||||    
T  27356585 gttcgaacccaggtaaaggcgtccaacctaacaatttcggcattgccaattaagctaggctttacagac 27356517  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 9559110 - 9559171
Alignment:
Q  17 gggttcaaacccaggtgaaggcgtccaacctaacaatttcaacattgtcagttgagctaggc 78  Q
    |||||| |||||||||||| | || |||||||||||| |||  ||||||| |||||||||||    
T  9559110 gggttcgaacccaggtgaaagtgttcaacctaacaatatcagtattgtcaattgagctaggc 9559171  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 7100487 - 7100544
Alignment:
Q  15 tcgggttcaaacccaggtgaaggcgtccaacctaacaatttcaacattgtcagttgag 72  Q
    |||||| ||||||| |||||||| | ||||||||||||||||  ||||| ||||||||    
T  7100487 tcgggtccaaacccgggtgaaggtggccaacctaacaatttcggcattgccagttgag 7100544  T

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