View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4331_low_2 (Length: 450)

Name: NF4331_low_2
Description: NF4331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4331_low_2
NF4331_low_2
[»] chr3 (17 HSPs)
chr3 (22-103)||(40926921-40927002)
chr3 (32-103)||(19984296-19984367)
chr3 (26-103)||(40926598-40926675)
chr3 (26-99)||(25578817-25578890)
chr3 (22-103)||(19984533-19984615)
chr3 (22-79)||(39269442-39269499)
chr3 (19-103)||(33799046-33799130)
chr3 (26-103)||(32516038-32516113)
chr3 (22-62)||(20737161-20737201)
chr3 (109-164)||(26926966-26927021)
chr3 (110-164)||(26927151-26927205)
chr3 (22-62)||(39269005-39269045)
chr3 (104-164)||(42637733-42637793)
chr3 (109-164)||(19984641-19984696)
chr3 (109-164)||(32034150-32034205)
chr3 (106-164)||(39269101-39269159)
chr3 (22-59)||(40230565-40230602)
[»] chr1 (13 HSPs)
chr1 (22-103)||(22826876-22826957)
chr1 (22-99)||(803355-803432)
chr1 (34-103)||(47086409-47086478)
chr1 (32-103)||(40073208-40073280)
chr1 (22-103)||(6238220-6238301)
chr1 (106-164)||(6238327-6238385)
chr1 (109-169)||(6237953-6238013)
chr1 (24-103)||(40073399-40073479)
chr1 (22-60)||(6238088-6238126)
chr1 (106-164)||(47086111-47086169)
chr1 (22-76)||(47086177-47086231)
chr1 (23-59)||(2997187-2997223)
chr1 (22-62)||(7171670-7171710)
[»] chr2 (6 HSPs)
chr2 (32-103)||(10485079-10485150)
chr2 (22-103)||(8044677-8044758)
chr2 (23-101)||(4721937-4722015)
chr2 (109-164)||(10485253-10485308)
chr2 (33-84)||(17265123-17265174)
chr2 (22-59)||(32667119-32667156)
[»] chr8 (15 HSPs)
chr8 (22-103)||(3895271-3895352)
chr8 (32-103)||(22188836-22188907)
chr8 (34-103)||(25186676-25186745)
chr8 (22-103)||(8056369-8056450)
chr8 (109-166)||(43901005-43901062)
chr8 (109-164)||(25186583-25186638)
chr8 (106-147)||(3895435-3895476)
chr8 (22-62)||(26800445-26800485)
chr8 (109-165)||(41456311-41456367)
chr8 (109-164)||(15968054-15968109)
chr8 (22-103)||(15967948-15968028)
chr8 (22-59)||(33435820-33435857)
chr8 (22-62)||(41456431-41456472)
chr8 (22-62)||(15857115-15857155)
chr8 (22-62)||(15968352-15968392)
[»] chr4 (14 HSPs)
chr4 (22-103)||(3640347-3640428)
chr4 (26-103)||(14945039-14945116)
chr4 (22-82)||(45684293-45684353)
chr4 (22-99)||(40716772-40716849)
chr4 (22-101)||(8305089-8305169)
chr4 (109-165)||(8304944-8305000)
chr4 (106-164)||(41743592-41743650)
chr4 (22-75)||(47491757-47491810)
chr4 (106-164)||(45684379-45684437)
chr4 (32-101)||(14115631-14115699)
chr4 (108-164)||(14115735-14115791)
chr4 (109-164)||(47491679-47491734)
chr4 (22-59)||(29113385-29113422)
chr4 (34-62)||(1923119-1923147)
[»] chr7 (8 HSPs)
chr7 (26-103)||(5266254-5266331)
chr7 (32-103)||(7832845-7832916)
chr7 (32-103)||(30768320-30768391)
chr7 (22-103)||(29645955-29646036)
chr7 (22-62)||(258570-258610)
chr7 (106-165)||(29646120-29646179)
chr7 (109-164)||(33834009-33834064)
chr7 (22-75)||(10903395-10903448)
[»] chr5 (6 HSPs)
chr5 (22-84)||(8081024-8081086)
chr5 (109-166)||(4563679-4563736)
chr5 (108-164)||(21019860-21019916)
chr5 (106-164)||(18873184-18873242)
chr5 (22-59)||(3015547-3015584)
chr5 (27-59)||(3763042-3763074)
[»] chr6 (8 HSPs)
chr6 (106-164)||(26394607-26394665)
chr6 (34-103)||(5592541-5592610)
chr6 (19-59)||(24558721-24558761)
chr6 (22-103)||(2923088-2923166)
chr6 (22-62)||(15102879-15102919)
chr6 (22-62)||(19712532-19712572)
chr6 (22-59)||(11316984-11317021)
chr6 (22-62)||(29742562-29742602)
[»] scaffold1138 (1 HSPs)
scaffold1138 (26-62)||(2002-2038)


Alignment Details
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 40926921 - 40927002
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  40926921 gggccacctaccgatccacgcaccaagcccaaagagtgttgctgggcgtgacggccgattcacgcaccaaagcccaaagagt 40927002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 19984367 - 19984296
Alignment:
Q  32 ccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||||    
T  19984367 ccgattcacgcaccaagcccaaagagcgttgctgggcgtgacggccgattcacgcaccaaagcccaaagagt 19984296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 40926598 - 40926675
Alignment:
Q  26 cacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||| ||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||| ||||||||    
T  40926598 cacctaccgattcacgcaccaagtccaaagagtgctgctgggcgtgacggccgattcacgcaccaaaacacaaagagt 40926675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 25578890 - 25578817
Alignment:
Q  26 cacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaa 99  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||    
T  25578890 cacctaccgattcacgcactaagcccaaagagtgttgctgggcgtgtcggccgattcacgcaccaaagcccaaa 25578817  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 19984615 - 19984533
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaa-cccaaagagt 103  Q
    ||||||||| |||||||||||||||||| ||||||| | || |||||||||||| |||||||| |||||||| ||||||||||    
T  19984615 gggccacctaccgattcacgcaccaagctcaaagagcgctgctgggcgtgacgggcgattcacgcaccaaaagcccaaagagt 19984533  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 39269442 - 39269499
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccga 79  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  39269442 gggccacctaccgattcacgcaccaagcccaaagagtgttgctgggcgtgacgaccga 39269499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 33799046 - 33799130
Alignment:
Q  19 catgggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    |||||| |||||  ||||||||||||||||||||||||||| || ||||||||| |||||||||||  ||| || ||||||||||    
T  33799046 catgggtcacctatcgattcacgcaccaagcccaaagagtgctgctgggcgtgatggccgattcacgtacccaagcccaaagagt 33799130  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 32516113 - 32516038
Alignment:
Q  26 cacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||| |||||||||||||||||||||||||||| || ||||| ||  ||||||||||| ||||||| ||||||||||    
T  32516113 cacctaccgattcacgcaccaagcccaaagagtgctgctgggcatg--ggccgattcacgcaccaaagcccaaagagt 32516038  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 20737161 - 20737201
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  20737161 gggccacctaccgattcacgcaccaagcccaaagagtgttg 20737201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 26926966 - 26927021
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    ||||||||||||||||||||| |||||| | |||||||| || |||||||||||||    
T  26926966 caatcctcaccttatgaaccggtttttaaggatgagttaggcctccaatttcatta 26927021  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 26927151 - 26927205
Alignment:
Q  110 aatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    |||||||||||||||||||| |||||| | |||||||| || |||||||||||||    
T  26927151 aatcctcaccttatgaaccggtttttaaggatgagttaggcctccaatttcatta 26927205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 39269045 - 39269005
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  39269045 gggccacctaccgattcacgcatcaagcccaaagagtgttg 39269005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 42637793 - 42637733
Alignment:
Q  104 acaggcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    |||| ||||||||||||||||||||| |||||| | ||||||||  | |||||||||||||    
T  42637793 acagacaatcctcaccttatgaaccggtttttaaggatgagttagacctccaatttcatta 42637733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 19984696 - 19984641
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    ||||||||||||||||||||| |||||| | ||||||||  | |||||||||||||    
T  19984696 caatcctcaccttatgaaccggtttttaaggatgagttagacctccaatttcatta 19984641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 32034150 - 32034205
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    ||||||||||||||||||||| |||||| | ||||||||  | |||||||||||||    
T  32034150 caatcctcaccttatgaaccggtttttaaggatgagttagacctccaatttcatta 32034205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 39269101 - 39269159
Alignment:
Q  106 aggcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    |||||||||||||||||||||||  |||||| | ||||||||  | |||||||||||||    
T  39269101 aggcaatcctcaccttatgaaccagtttttaaggatgagttagacctccaatttcatta 39269159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 40230602 - 40230565
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtg 59  Q
    ||||||||| || |||||||||||||||||||||||||    
T  40230602 gggccacctacctattcacgcaccaagcccaaagagtg 40230565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 22826957 - 22826876
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| ||||||||||    
T  22826957 gggccacctaccgattcacgcaccaagcccaaagagtgttgttgggcgtgacgaccgattcgcgcaccaaagcccaaagagt 22826876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 803432 - 803355
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaa 99  Q
    ||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||| ||||||| ||||||    
T  803432 gggccacctgccgattcacgctccaaacccaacgagtgttgctgggcgtgacggccgattcacgcaccaaagcccaaa 803355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 47086478 - 47086409
Alignment:
Q  34 gattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||| | ||||||| ||||||||||    
T  47086478 gattcacgcaccaagcccaaagagtgatgatgggcgtgacggccgattcgcgcaccaaagcccaaagagt 47086409  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 40073208 - 40073280
Alignment:
Q  32 ccgattcacgcaccaagcccaaa-gagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||| ||||||||||    
T  40073208 ccgattcacgcaccaagcccaaaagagtgttgctgggcgtgacagccgattcacgcaccaaagcccaaagagt 40073280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 6238301 - 6238220
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||||| ||||||||||||| |||||||||||||| || | |||||||| ||||| |||| ||||||| ||||||||||    
T  6238301 gggccacctaccgattcacgcacaaagcccaaagagtgctgctaggcgtgacagccgaatcacgcaccaaagcccaaagagt 6238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 6238385 - 6238327
Alignment:
Q  106 aggcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    |||||||||||||||||||||||| |||||| | |||||||| || |||||||||||||    
T  6238385 aggcaatcctcaccttatgaaccggtttttaaggatgagttatgcctccaatttcatta 6238327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 6238013 - 6237953
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcattaatcct 169  Q
    ||||||||||||||||||||| |||||| | |||||||| || ||||||||||||| ||||    
T  6238013 caatcctcaccttatgaaccggtttttaaggatgagttaggcctccaatttcattagtcct 6237953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 40073399 - 40073479
Alignment:
Q  24 gccacctgccgattcacgcaccaagcccaaa-gagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||| |||||||||| |||||||||||| |||||||| |||  ||||||||| |||||| |||||||  |||||||||    
T  40073399 gccacctaccgattcacgaaccaagcccaaaagagtgttgctggaggtgacggccaattcacgcaccaaaggccaaagagt 40073479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 6238126 - 6238088
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgt 60  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  6238126 gggccacctaccgattcacgcaccaagcccaaagagtgt 6238088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 47086169 - 47086111
Alignment:
Q  106 aggcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    |||||||||||||||||||||||| |||||| | ||||||||  | |||||||||||||    
T  47086169 aggcaatcctcaccttatgaaccggtttttaaggatgagttagacctccaatttcatta 47086111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 47086231 - 47086177
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggc 76  Q
    ||||||||| ||||||||||||||||||| |||||||| || ||| |||||||||    
T  47086231 gggccacctaccgattcacgcaccaagccaaaagagtgctgctggacgtgacggc 47086177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 2997223 - 2997187
Alignment:
Q  23 ggccacctgccgattcacgcaccaagcccaaagagtg 59  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2997223 ggccacctaccgattcacgcaccaagcccaaagagtg 2997187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 7171670 - 7171710
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  7171670 gggccacctaccgattcacgcaccaaacccaaagagtgttg 7171710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 10485079 - 10485150
Alignment:
Q  32 ccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  10485079 ccgattcacgcaccaagcccaaagagtgttgctgggcgtgacggccgattcacgcaccaaagcccaaagagt 10485150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 8044758 - 8044677
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||||| |||||||||  ||||||||||||||||| || |||||||||| |||||||||  ||||||| ||||||||||    
T  8044758 gggccacctaccgattcacaaaccaagcccaaagagtgatgctgggcgtgacagccgattcatgcaccaaagcccaaagagt 8044677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 4722015 - 4721937
Alignment:
Q  23 ggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaaga 101  Q
    |||||||| ||||||||||||||||||| | |||||| || ||| || |||| ||||||||| | ||||| ||||||||    
T  4722015 ggccacctaccgattcacgcaccaagcctatagagtgctgctggacgagacgtccgattcacgctccaaagcccaaaga 4721937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 10485253 - 10485308
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    |||||||||||||| |||||| |||||| | |||||||| || |||||||||||||    
T  10485253 caatcctcaccttacgaaccggtttttaaggatgagttaggcctccaatttcatta 10485308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 17265174 - 17265123
Alignment:
Q  33 cgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcac 84  Q
    ||||||||||||||||| ||||||||| |  ||||||||| |||||||||||    
T  17265174 cgattcacgcaccaagcacaaagagtgcttctgggcgtgatggccgattcac 17265123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 32667119 - 32667156
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtg 59  Q
    |||||| || ||||||||||||||||||||||||||||    
T  32667119 gggccatctaccgattcacgcaccaagcccaaagagtg 32667156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 3895271 - 3895352
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||    
T  3895271 gggccaccaaccgattcacgcaccaagcccaaagagtgctgctgggcgtgacggccgattcacgcaccaaagcccaaagagt 3895352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 22188836 - 22188907
Alignment:
Q  32 ccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    |||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||| ||||||||||    
T  22188836 ccgattcacgcaccaagcccaaagagtgctgctgggcgtgacggctgattcacacaccaaagcccaaagagt 22188907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 25186676 - 25186745
Alignment:
Q  34 gattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  || |||| ||||||||||    
T  25186676 gattcacgcaccaagcccaaagagtgctgttgggcgtgacggccgattcaggcatcaaagcccaaagagt 25186745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 8056450 - 8056369
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    |||||||||  |||||||| |||||| ||||||||| | || |||||||||| |||||||||||||||||| ||||||||||    
T  8056450 gggccacctatcgattcactcaccaaacccaaagagcgctgctgggcgtgacagccgattcacacaccaaagcccaaagagt 8056369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 43901062 - 43901005
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcattaat 166  Q
    ||||||||||||||||||||| |||||| | |||||||| || |||||||||||||||    
T  43901062 caatcctcaccttatgaaccggtttttaaggatgagttaggcctccaatttcattaat 43901005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 25186583 - 25186638
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    ||||||||||||||||||||| |||||| | |||||||| || |||||||||||||    
T  25186583 caatcctcaccttatgaaccggtttttaaggatgagttaggcctccaatttcatta 25186638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 3895435 - 3895476
Alignment:
Q  106 aggcaatcctcaccttatgaaccgatttttatgaatgagtta 147  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  3895435 aggcaatcctcaccttatgaaccgatttttaaggatgagtta 3895476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 26800485 - 26800445
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  26800485 gggccacctaccgattcacgcaccaagctcaaagagtgttg 26800445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 41456367 - 41456311
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcattaa 165  Q
    |||||||||||| |||||||| |||||| | |||||||| || ||||||||||||||    
T  41456367 caatcctcacctgatgaaccggtttttaaggatgagttaggcctccaatttcattaa 41456311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 15968109 - 15968054
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    ||||||||||||||||||||| |||||| | |||||||| ||  ||||||||||||    
T  15968109 caatcctcaccttatgaaccggtttttaaggatgagttaggccgccaatttcatta 15968054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 15968028 - 15967948
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||||| ||||||||| |||||||||||| ||||| || | | ||||||  ||||||||  ||||||| ||||||||||    
T  15968028 gggccacctaccgattcacacaccaagcccaacgagtgctgct-gacgtgacaaccgattcatgcaccaaagcccaaagagt 15967948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 33435820 - 33435857
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtg 59  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  33435820 gggccacctactgattcacgcaccaagcccaaagagtg 33435857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 41456472 - 41456431
Alignment:
Q  22 gggccacctgccgattcacgcacc-aagcccaaagagtgttg 62  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  41456472 gggccacctaccgattcacgcaccaaagcccaaagagtgttg 41456431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 15857115 - 15857155
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||||||| || |||||||||||||||||||||| |||||    
T  15857115 gggccacctacctattcacgcaccaagcccaaagactgttg 15857155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 15968392 - 15968352
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  15968392 gggccacctaccaatacacgcaccaagcccaaagagtgttg 15968352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 3640347 - 3640428
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||    
T  3640347 gggccacctaccgatccacgcaccaagcccaaagagtgctgctgggcgtgacggccgattcacgcaccaaagcccaaagagt 3640428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 14945039 - 14945116
Alignment:
Q  26 cacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||  ||||||| ||||||||||    
T  14945039 cacctaccgattcacgcaccaagcccaaagagtgttgatgggcgtgacggtcgattcatgcaccaaagcccaaagagt 14945116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 45684353 - 45684293
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattc 82  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45684353 gggccacctaccgattcacgcaccaagcccaaagagtgttgttgggcgtgatggccgattc 45684293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 40716849 - 40716772
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaa 99  Q
    ||||||||| ||||||||||||| ||| | |||||||| |||||||||||||||||||||||| ||||||| ||||||    
T  40716849 gggccacctaccgattcacgcacaaagtctaaagagtgatgttgggcgtgacggccgattcacgcaccaaagcccaaa 40716772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 8305169 - 8305089
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaa-cccaaaga 101  Q
    |||||||||  ||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||| ||||||||    
T  8305169 gggccacctatcgattcatgcatcaagcccaaagagtgctgctgggcgtgacggccgattcacgcaccaaaagcccaaaga 8305089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 8305000 - 8304944
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcattaa 165  Q
    |||||||||||||||||||||||||||| |||||||| | || ||||||||||||||    
T  8305000 caatcctcaccttatgaaccgatttttaagaatgagtcaggcctccaatttcattaa 8304944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 41743592 - 41743650
Alignment:
Q  106 aggcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    |||||||||||||||||||||||| |||||| | |||||||| || |||||||||||||    
T  41743592 aggcaatcctcaccttatgaaccggtttttaaggatgagttaggcctccaatttcatta 41743650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 47491810 - 47491757
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacgg 75  Q
    ||||||||| || | ||||| |||||||||||||||||||||||||||||||||    
T  47491810 gggccacctaccaaatcacgtaccaagcccaaagagtgttgttgggcgtgacgg 47491757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 45684437 - 45684379
Alignment:
Q  106 aggcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    |||||||||||||||||||||||  |||||| | |||||||| || |||||||||||||    
T  45684437 aggcaatcctcaccttatgaaccagtttttaaggatgagttaggcctccaatttcatta 45684379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 14115699 - 14115631
Alignment:
Q  32 ccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaaga 101  Q
    |||||||||||||||| ||||||||||| |  ||||||||||| || |||||| ||||||| ||||||||    
T  14115699 ccgattcacgcaccaatcccaaagagtgctactgggcgtgacgacc-attcacgcaccaaagcccaaaga 14115631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 14115791 - 14115735
Alignment:
Q  108 gcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    |||||||||||||||||||||| |||||| | |||||||  || |||||||||||||    
T  14115791 gcaatcctcaccttatgaaccggtttttaaggatgagttgggcctccaatttcatta 14115735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 47491734 - 47491679
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    ||||||||| ||||||||||| |||||| | ||||||||||| ||| |||||||||    
T  47491734 caatcctcaacttatgaaccggtttttaaggatgagttaagcctccgatttcatta 47491679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 29113385 - 29113422
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtg 59  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  29113385 gggccacctactgattcacgcaccaagcccaaagagtg 29113422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 1923147 - 1923119
Alignment:
Q  34 gattcacgcaccaagcccaaagagtgttg 62  Q
    |||||||||||||||||||||||||||||    
T  1923147 gattcacgcaccaagcccaaagagtgttg 1923119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 5266254 - 5266331
Alignment:
Q  26 cacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||| ||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||    
T  5266254 cacctaccgattcacgcactaagcccaaagagtgttgttgagcatgacggccgattcacgcaccaaagcccaaagagt 5266331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 7832916 - 7832845
Alignment:
Q  32 ccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||| |||||||||||||| | ||||||||    
T  7832916 ccgattcacgcatcaagcccaaagagcgctgttgggcgtgacggccaattcacacaccaaagcgcaaagagt 7832845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 30768320 - 30768391
Alignment:
Q  32 ccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    |||||||||||| |||||||||||||||| ||||||||||||| | ||||||| ||||||| ||||||||||    
T  30768320 ccgattcacgcatcaagcccaaagagtgtcgttgggcgtgacgactgattcacgcaccaaagcccaaagagt 30768391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 29645955 - 29646036
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaa-cccaaagagt 103  Q
    ||||||||| | ||||||| ||||||||||||||||||||||||| | || |||||||||||| |||||||| ||||||||||    
T  29645955 gggccacctactgattcacacaccaagcccaaagagtgttgttggacatg-cggccgattcacgcaccaaaagcccaaagagt 29646036  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 258570 - 258610
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  258570 gggccacctaccgattcacgcaccaagcccaaagagtgttg 258610  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 29646120 - 29646179
Alignment:
Q  106 aggcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcattaa 165  Q
    |||||||||||||||||||||||| |||||| | |||||||| ||  |||||||||||||    
T  29646120 aggcaatcctcaccttatgaaccggtttttaaggatgagttaggcccccaatttcattaa 29646179  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 33834009 - 33834064
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    ||||||||||||||||||||| |||||| | |||||||| || |||||||||||||    
T  33834009 caatcctcaccttatgaaccggtttttaaggatgagttaggcctccaatttcatta 33834064  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 10903448 - 10903395
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacgg 75  Q
    ||||||||| |||||||||||| ||||||||||||||| || | ||||||||||    
T  10903448 gggccacctaccgattcacgcatcaagcccaaagagtgctgctaggcgtgacgg 10903395  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 8081086 - 8081024
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcac 84  Q
    ||||||||| ||||||||| |||||||||||||||||| || |||||||||||||||||||||    
T  8081086 gggccacctaccgattcacacaccaagcccaaagagtgctgctgggcgtgacggccgattcac 8081024  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 4563736 - 4563679
Alignment:
Q  109 caatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcattaat 166  Q
    ||||||||||||||||||||| |||||| | ||||| || || |||||||||||||||    
T  4563736 caatcctcaccttatgaaccggtttttaaggatgaggtaggcctccaatttcattaat 4563679  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 21019916 - 21019860
Alignment:
Q  108 gcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    ||||||||||||||| ||||||||||||| | |||| ||| || |||||||||||||    
T  21019916 gcaatcctcaccttaagaaccgatttttaaggatgacttaggcctccaatttcatta 21019860  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 18873242 - 18873184
Alignment:
Q  106 aggcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    |||||||||||||||||||||||  |||||| | ||||||||  | |||||||||||||    
T  18873242 aggcaatcctcaccttatgaaccagtttttaaggatgagttagacctccaatttcatta 18873184  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 3015584 - 3015547
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtg 59  Q
    ||||||||| || |||||||||||||||||||||||||    
T  3015584 gggccacctacctattcacgcaccaagcccaaagagtg 3015547  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 3763042 - 3763074
Alignment:
Q  27 acctgccgattcacgcaccaagcccaaagagtg 59  Q
    |||| ||||||||||||||||||||||||||||    
T  3763042 acctaccgattcacgcaccaagcccaaagagtg 3763074  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 26394607 - 26394665
Alignment:
Q  106 aggcaatcctcaccttatgaaccgatttttatgaatgagttaagcttccaatttcatta 164  Q
    ||||||||||||||||| ||||||||||||| |||||| ||| || |||||||||||||    
T  26394607 aggcaatcctcaccttaagaaccgatttttaagaatgacttaggcctccaatttcatta 26394665  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 5592610 - 5592541
Alignment:
Q  34 gattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    |||||||||||||| | |||||| |||||||||| ||||||| ||||||||  ||||||||| |||||||    
T  5592610 gattcacgcaccaaactcaaagaatgttgttgggtgtgacggtcgattcacgtaccaaaacctaaagagt 5592541  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 24558721 - 24558761
Alignment:
Q  19 catgggccacctgccgattcacgcaccaagcccaaagagtg 59  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  24558721 catgggccacctaccgattcacgcaccaagcccaaagagtg 24558761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 2923166 - 2923088
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttgttgggcgtgacggccgattcacacaccaaaacccaaagagt 103  Q
    ||||||||| |||||||||||||||||||||||||||| |||   |||||||  |  |||||| ||||||| ||||||||||    
T  2923166 gggccacctaccgattcacgcaccaagcccaaagagtgctgt---gcgtgacaactaattcacgcaccaaagcccaaagagt 2923088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 15102919 - 15102879
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  15102919 gggccacctaccgattcacgcaccaaacccaaagagtgttg 15102879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 19712572 - 19712532
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  19712572 gggccacctaccgattcacgcaccatgcccaaagagtgttg 19712532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 11316984 - 11317021
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtg 59  Q
    ||||||||| || |||||||||||||||||||||||||    
T  11316984 gggccacctacctattcacgcaccaagcccaaagagtg 11317021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 29742602 - 29742562
Alignment:
Q  22 gggccacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||||| | || ||||||||||||||||||||||||||||    
T  29742602 gggccacttacctattcacgcaccaagcccaaagagtgttg 29742562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1138 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1138
Description:

Target: scaffold1138; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 2038 - 2002
Alignment:
Q  26 cacctgccgattcacgcaccaagcccaaagagtgttg 62  Q
    ||||| |||||||||||||||||||||||||||||||    
T  2038 cacctaccgattcacgcaccaagcccaaagagtgttg 2002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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