View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4331_low_5 (Length: 337)

Name: NF4331_low_5
Description: NF4331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4331_low_5
NF4331_low_5
[»] chr8 (10 HSPs)
chr8 (1-246)||(33983195-33983444)
chr8 (40-141)||(33953694-33953795)
chr8 (40-141)||(33993214-33993315)
chr8 (40-146)||(33976290-33976396)
chr8 (76-141)||(33961000-33961065)
chr8 (152-195)||(33953620-33953663)
chr8 (152-195)||(33960926-33960969)
chr8 (152-195)||(33976221-33976264)
chr8 (152-195)||(33993140-33993183)
chr8 (291-327)||(33983114-33983150)
[»] scaffold0391 (1 HSPs)
scaffold0391 (40-146)||(13253-13359)
[»] chr7 (1 HSPs)
chr7 (76-141)||(8275668-8275733)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 33983444 - 33983195
Alignment:
Q  1 tatcgtctctttattgcacgttat----cactgtcaaatttaaaagattggcgactgagaatgataattcacaacttaaacaacctgccacgtacagatt 96  Q
    ||||||||||| ||||||||||||    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33983444 tatcgtctcttcattgcacgttatatatcactatcaaatttaaaagattggcgactgagaatgataattcacaacttaaacaacctgcaacgtacagatt 33983345  T
Q  97 ccttagattgcacaaattaccaaattcctcagataaacttgaaagacttaaatgatagatttagtagcttaccaatggaagtcggtatagcttccaagtt 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33983344 ccttagattgcacaaattaccaaattcctcagataaatttgaaagacttaaatgatagatttagtagcttaccaatggaagtcggtatagcttccaagtt 33983245  T
Q  197 gatcggtacatgaaatgaggcttaaatgatagatgacagatcatcttacg 246  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33983244 gatcggtacatgaaatgaggcttcaatgatagatgacagatcatcttacg 33983195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 33953795 - 33953694
Alignment:
Q  40 aagattggcgactgagaatgataattcacaacttaaacaacctgccacgtacagattccttagattgcacaaattaccaaattcctcagataaacttgaa 139  Q
    ||||||| | ||||||||||  ||||||  ||||  ||||| ||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  33953795 aagattgacaactgagaatggcaattcaatacttgcacaacttgccatgtccagattctttagattgcacaaattaccaaattcctcaggtaaacttgaa 33953696  T
Q  140 ag 141  Q
    ||    
T  33953695 ag 33953694  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 33993315 - 33993214
Alignment:
Q  40 aagattggcgactgagaatgataattcacaacttaaacaacctgccacgtacagattccttagattgcacaaattaccaaattcctcagataaacttgaa 139  Q
    ||||||| | ||||||||||  ||||||  ||||  ||||| ||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  33993315 aagattgacaactgagaatggcaattcaatacttgcacaacttgccatgtccagattctttagattgcacaaattaccaaattcctcaggtaaacttgaa 33993216  T
Q  140 ag 141  Q
    ||    
T  33993215 ag 33993214  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 33976396 - 33976290
Alignment:
Q  40 aagattggcgactgagaatgataattcacaacttaaacaacctgccacgtacagattccttagattgcacaaattaccaaattcctcagataaacttgaa 139  Q
    ||||||| | ||||||||||  ||||||  ||||  ||||  ||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  33976396 aagattgacaactgagaatggcaattcaatacttgcacaagttgccatgtccagattctttagattgcacaaattaccaaattcctcaggtaaacttgaa 33976297  T
Q  140 agactta 146  Q
    || ||||    
T  33976296 aggctta 33976290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 33961065 - 33961000
Alignment:
Q  76 acaacctgccacgtacagattccttagattgcacaaattaccaaattcctcagataaacttgaaag 141  Q
    ||||| ||||| ||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||    
T  33961065 acaacttgccatgtacagatttcttagattgcaaagattaccaaattcctcaggtaaacttgaaag 33961000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 33953663 - 33953620
Alignment:
Q  152 tagatttagtagcttaccaatggaagtcggtatagcttccaagt 195  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||    
T  33953663 tagatttaacagctttccaatggaagtcggtatagcttccaagt 33953620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 33960969 - 33960926
Alignment:
Q  152 tagatttagtagcttaccaatggaagtcggtatagcttccaagt 195  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||    
T  33960969 tagatttaacagctttccaatggaagtcggtatagcttccaagt 33960926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 33976264 - 33976221
Alignment:
Q  152 tagatttagtagcttaccaatggaagtcggtatagcttccaagt 195  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||    
T  33976264 tagatttaacagctttccaatggaagtcggtatagcttccaagt 33976221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 33993183 - 33993140
Alignment:
Q  152 tagatttagtagcttaccaatggaagtcggtatagcttccaagt 195  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||    
T  33993183 tagatttaacagctttccaatggaagtcggtatagcttccaagt 33993140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 33983150 - 33983114
Alignment:
Q  291 gatccaagttgtaggagttttagaacaatagcctatg 327  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  33983150 gatctaagttgtaggagttttagatcaatagcctatg 33983114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 13359 - 13253
Alignment:
Q  40 aagattggcgactgagaatgataattcacaacttaaacaacctgccacgtacagattccttagattgcacaaattaccaaattcctcagataaacttgaa 139  Q
    ||||||| | ||||||||||  ||||||  ||||  ||||| ||||| ||||||||| ||||||||||| | ||||||||||||||||| ||||||||||    
T  13359 aagattgacaactgagaatggcaattcaatacttgcacaacttgccatgtacagatttcttagattgcaaagattaccaaattcctcaggtaaacttgaa 13260  T
Q  140 agactta 146  Q
    || ||||    
T  13259 aggctta 13253  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 8275668 - 8275733
Alignment:
Q  76 acaacctgccacgtacagattccttagattgcacaaattaccaaattcctcagataaacttgaaag 141  Q
    ||||| ||||| ||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  8275668 acaacttgccatgtatagattccttaggttgcacaaattaccaaattcctcgggtaaacttgaaag 8275733  T

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