View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4331_low_6 (Length: 330)

Name: NF4331_low_6
Description: NF4331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4331_low_6
NF4331_low_6
[»] scaffold0016 (3 HSPs)
scaffold0016 (44-311)||(53813-54078)
scaffold0016 (12-48)||(51254-51290)
scaffold0016 (258-307)||(37607-37656)
[»] chr4 (4 HSPs)
chr4 (83-146)||(15707358-15707421)
chr4 (44-88)||(15707440-15707484)
chr4 (12-48)||(15708819-15708855)
chr4 (15-48)||(26795948-26795981)
[»] scaffold0642 (3 HSPs)
scaffold0642 (83-146)||(4102-4165)
scaffold0642 (44-88)||(4184-4228)
scaffold0642 (12-48)||(6663-6699)
[»] scaffold0345 (3 HSPs)
scaffold0345 (83-146)||(14014-14077)
scaffold0345 (44-88)||(14096-14140)
scaffold0345 (12-48)||(16576-16612)
[»] scaffold0105 (3 HSPs)
scaffold0105 (83-146)||(24904-24967)
scaffold0105 (12-48)||(22370-22406)
scaffold0105 (44-88)||(24841-24885)
[»] scaffold1526 (2 HSPs)
scaffold1526 (91-146)||(1249-1304)
scaffold1526 (44-88)||(1173-1217)
[»] chr8 (3 HSPs)
chr8 (83-146)||(44495504-44495567)
chr8 (12-48)||(44498151-44498187)
chr8 (44-85)||(44495589-44495630)
[»] chr2 (3 HSPs)
chr2 (91-146)||(3378229-3378284)
chr2 (44-88)||(3378316-3378360)
chr2 (12-48)||(3380883-3380919)
[»] chr6 (5 HSPs)
chr6 (238-307)||(21140128-21140194)
chr6 (147-231)||(21221835-21221922)
chr6 (256-307)||(21221708-21221759)
chr6 (258-306)||(21245957-21246005)
chr6 (258-307)||(21200690-21200739)


Alignment Details
Target: scaffold0016 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 44 - 311
Target Start/End: Original strand, 53813 - 54078
Alignment:
Q  44 aagaacgaagccactcaccgctctagagtgaattcatggatgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagt 143  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53813 aagaacgaagccactcaccgctctggagtgaattcatggatgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagt 53912  T
Q  144 aagtattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgttttgatcctctttggtaatttggtcagtactcatttact 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53913 aagtattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgttttgatcctctttggtaattttgtcagtactcatttact 54012  T
Q  244 aagacttagtaatattcaatttcatctcagacattttgtactaaataacatttattctatgcaatgaa 311  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54013 aagactt--taatattcaatttcatctcagacattttgtactaaataacatttattctaagcaatgaa 54078  T

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Target: scaffold0016; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 51254 - 51290
Alignment:
Q  12 attatactatatcctctatgtgatgggcataaaagaa 48  Q
    |||||||||||||||||||||||||||||||||||||    
T  51254 attatactatatcctctatgtgatgggcataaaagaa 51290  T

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Target: scaffold0016; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 37607 - 37656
Alignment:
Q  258 ttcaatttcatctcagacattttgtactaaataacatttattctatgcaa 307  Q
    ||||||||||||  ||| ||||||| |||||||||| |||||||||||||    
T  37607 ttcaatttcatcgtagaaattttgttctaaataacaattattctatgcaa 37656  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 15707421 - 15707358
Alignment:
Q  83 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707421 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 15707358  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 15707484 - 15707440
Alignment:
Q  44 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 88  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15707484 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 15707440  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 15708855 - 15708819
Alignment:
Q  12 attatactatatcctctatgtgatgggcataaaagaa 48  Q
    |||||||||||||||||||||||||||||||||||||    
T  15708855 attatactatatcctctatgtgatgggcataaaagaa 15708819  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 26795948 - 26795981
Alignment:
Q  15 atactatatcctctatgtgatgggcataaaagaa 48  Q
    ||||||||| ||||||||||||||||||||||||    
T  26795948 atactatatactctatgtgatgggcataaaagaa 26795981  T

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Target: scaffold0642 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 4165 - 4102
Alignment:
Q  83 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 146  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4165 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 4102  T

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Target: scaffold0642; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 4228 - 4184
Alignment:
Q  44 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 88  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4228 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 4184  T

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Target: scaffold0642; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 6699 - 6663
Alignment:
Q  12 attatactatatcctctatgtgatgggcataaaagaa 48  Q
    |||||||||||||||||||||||||||||||||||||    
T  6699 attatactatatcctctatgtgatgggcataaaagaa 6663  T

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Target: scaffold0345 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 14077 - 14014
Alignment:
Q  83 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 146  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14077 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 14014  T

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Target: scaffold0345; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 14140 - 14096
Alignment:
Q  44 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 88  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14140 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 14096  T

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Target: scaffold0345; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 16612 - 16576
Alignment:
Q  12 attatactatatcctctatgtgatgggcataaaagaa 48  Q
    |||||||||||||||||||||||||||||||||||||    
T  16612 attatactatatcctctatgtgatgggcataaaagaa 16576  T

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Target: scaffold0105 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 24904 - 24967
Alignment:
Q  83 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 146  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24904 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 24967  T

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Target: scaffold0105; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 22370 - 22406
Alignment:
Q  12 attatactatatcctctatgtgatgggcataaaagaa 48  Q
    |||||||||||||||||||||||||||||||||||||    
T  22370 attatactatatcctctatgtgatgggcataaaagaa 22406  T

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Target: scaffold0105; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 24841 - 24885
Alignment:
Q  44 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 88  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  24841 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 24885  T

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Target: scaffold1526 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 1249 - 1304
Alignment:
Q  91 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1249 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 1304  T

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Target: scaffold1526; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 1173 - 1217
Alignment:
Q  44 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 88  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  1173 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 1217  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 44495567 - 44495504
Alignment:
Q  83 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 146  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44495567 atgggtatgaatggagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 44495504  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 44498187 - 44498151
Alignment:
Q  12 attatactatatcctctatgtgatgggcataaaagaa 48  Q
    |||||||||||||||||||||||||||||||||||||    
T  44498187 attatactatatcctctatgtgatgggcataaaagaa 44498151  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 44495630 - 44495589
Alignment:
Q  44 aagaacgaagccactcaccgctctagagtgaattcatggatg 85  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  44495630 aagaacgaagccactcaccgatctggagtgaattcatggatg 44495589  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 3378284 - 3378229
Alignment:
Q  91 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378284 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 3378229  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 3378360 - 3378316
Alignment:
Q  44 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 88  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3378360 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 3378316  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 3380919 - 3380883
Alignment:
Q  12 attatactatatcctctatgtgatgggcataaaagaa 48  Q
    |||||||||||||||||||||||||||||||||||||    
T  3380919 attatactatatcctctatgtgatgggcataaaagaa 3380883  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 21140194 - 21140128
Alignment:
Q  238 tttactaagacttagtaatattcaatttcatctcagacattttgtactaaataacatttattctatgcaa 307  Q
    ||||||||||||||   |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  21140194 tttactaagactta---atattcaatttcatctcagacattttgttctaaataacaattattctatgcaa 21140128  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 21221922 - 21221835
Alignment:
Q  147 tattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgtt---ttgatcctctttggtaatttggtcag 231  Q
    |||| |||||||||||||||||||||||||||||||| || |||||||| || | ||||   ||||||||||||||||||||| ||||    
T  21221922 tattatatcactattaggagcaacatcatcagccacagataattcctattttcagtgttttcttgatcctctttggtaatttgttcag 21221835  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 21221759 - 21221708
Alignment:
Q  256 tattcaatttcatctcagacattttgtactaaataacatttattctatgcaa 307  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  21221759 tattcaatttcatctcagacattttgttctaaataacaattattctatgcaa 21221708  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 21245957 - 21246005
Alignment:
Q  258 ttcaatttcatctcagacattttgtactaaataacatttattctatgca 306  Q
    ||||||||||||||| |||||||||  ||||||||| ||||||||||||    
T  21245957 ttcaatttcatctcatacattttgttataaataacaattattctatgca 21246005  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 21200739 - 21200690
Alignment:
Q  258 ttcaatttcatctcagacattttgtactaaataacatttattctatgcaa 307  Q
    ||||||||||||| ||||||||||| |||||||||| ||| | |||||||    
T  21200739 ttcaatttcatcttagacattttgttctaaataacaattactttatgcaa 21200690  T

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