View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4332-Insertion-1 (Length: 161)
Name: NF4332-Insertion-1
Description: NF4332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4332-Insertion-1 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 3e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 3e-83
Query Start/End: Original strand, 6 - 161
Target Start/End: Original strand, 58934 - 59089
Alignment:
| Q |
6 |
gaaagtttaaattaactcattagcagtcatagattatgaatgaatacatctccgagcaacaaagaaaagaacaaacctgttggaaggtgcttagggatgc |
105 |
Q |
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| T |
58934 |
gaaagtttaaattaactcattagcagtcatagattatgaatgaatacatctccgagcaacaaagaaaagaacaaacctgttggaaggtgcttagggatgc |
59033 |
T |
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| Q |
106 |
caagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccacct |
161 |
Q |
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| T |
59034 |
caagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccacct |
59089 |
T |
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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 8690190 - 8690104
Alignment:
| Q |
75 |
aacaaacctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccacct |
161 |
Q |
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| T |
8690190 |
aacaaacctgctggaaggtgctaagagatgccaagatggaacctccgatccagacactgtattttctctcaggtggtgcaaccacct |
8690104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 37050189 - 37050270
Alignment:
| Q |
80 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccacct |
161 |
Q |
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| T |
37050189 |
acctgttggaaagtgctgagagatgccaaaatggaacctccaatccagacactgtacttcctctctggtggtgctacaacct |
37050270 |
T |
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Target: chr2 (Bit Score: 50; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 1261854 - 1261935
Alignment:
| Q |
80 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccacct |
161 |
Q |
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| T |
1261854 |
acctgttgaaaggtactgagtgatgccaagatagacccaccaatccagacactgtacttcctctcaggaggtgcaaccacct |
1261935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 41388764 - 41388683
Alignment:
| Q |
80 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccacct |
161 |
Q |
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| T |
41388764 |
acctgttgaaaagtgctaagagaagctaagatagagccaccaatccagacactgtattttctctcgggtggagcaaccacct |
41388683 |
T |
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Target: scaffold0015 (Bit Score: 38; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 68800 - 68719
Alignment:
| Q |
80 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccacct |
161 |
Q |
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| T |
68800 |
acctgttggaaggtgctgagggaagccaaaatggagcctccaatccagacactatacttcctctctggtggtgcaaccacct |
68719 |
T |
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