View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4332_high_1_N (Length: 1072)

Name: NF4332_high_1_N
Description: NF4332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4332_high_1_N
NF4332_high_1_N
[»] chr5 (33 HSPs)
chr5 (313-1072)||(38816178-38816932)
chr5 (503-652)||(38821782-38821928)
chr5 (862-937)||(19820428-19820503)
chr5 (782-911)||(22423764-22423895)
chr5 (870-937)||(22013364-22013431)
chr5 (863-937)||(42469171-42469245)
chr5 (863-912)||(15410483-15410532)
chr5 (863-915)||(6326332-6326384)
chr5 (864-922)||(15382442-15382500)
chr5 (865-898)||(6035472-6035505)
chr5 (780-829)||(8420075-8420124)
chr5 (862-915)||(21191090-21191143)
chr5 (862-898)||(3966492-3966528)
chr5 (782-834)||(9929668-9929720)
chr5 (862-898)||(17123037-17123073)
chr5 (871-915)||(21522722-21522766)
chr5 (871-915)||(21533288-21533332)
chr5 (862-898)||(27144452-27144488)
chr5 (814-939)||(37328829-37328955)
chr5 (862-937)||(6247572-6247647)
chr5 (862-905)||(14674251-14674294)
chr5 (862-905)||(19579683-19579726)
chr5 (863-922)||(21137654-21137713)
chr5 (862-905)||(34879332-34879375)
chr5 (863-905)||(5873548-5873590)
chr5 (860-898)||(11685928-11685966)
chr5 (780-810)||(24906250-24906280)
chr5 (863-893)||(27932229-27932259)
chr5 (862-896)||(28588708-28588742)
chr5 (869-915)||(36642803-36642849)
chr5 (862-911)||(19552577-19552626)
chr5 (864-937)||(30135264-30135336)
chr5 (860-889)||(32766975-32767004)
[»] chr3 (26 HSPs)
chr3 (30-259)||(34899746-34899975)
chr3 (862-937)||(8383207-8383282)
chr3 (863-922)||(24205076-24205135)
chr3 (871-937)||(8842280-8842346)
chr3 (862-906)||(5407281-5407325)
chr3 (825-924)||(5441029-5441128)
chr3 (812-901)||(8039818-8039908)
chr3 (862-922)||(28917966-28918026)
chr3 (863-922)||(4991002-4991061)
chr3 (869-928)||(10335327-10335386)
chr3 (862-937)||(55401025-55401100)
chr3 (862-936)||(8587055-8587129)
chr3 (863-913)||(9800014-9800064)
chr3 (862-936)||(32429414-32429488)
chr3 (862-914)||(2620087-2620139)
chr3 (862-922)||(15796328-15796388)
chr3 (862-914)||(26492239-26492291)
chr3 (866-905)||(21720746-21720785)
chr3 (862-937)||(25064859-25064934)
chr3 (780-818)||(4466538-4466576)
chr3 (780-810)||(5440965-5440995)
chr3 (862-912)||(12674535-12674585)
chr3 (780-818)||(13807237-13807275)
chr3 (864-938)||(14223889-14223962)
chr3 (864-905)||(3865592-3865633)
chr3 (864-905)||(12703989-12704030)
[»] chr7 (32 HSPs)
chr7 (863-937)||(27944991-27945065)
chr7 (863-937)||(24105629-24105702)
chr7 (862-915)||(11722132-11722185)
chr7 (812-894)||(29787354-29787435)
chr7 (814-924)||(24339605-24339716)
chr7 (862-922)||(1433419-1433479)
chr7 (831-912)||(19206025-19206107)
chr7 (862-898)||(32308109-32308145)
chr7 (866-937)||(2034392-2034462)
chr7 (862-913)||(2425767-2425818)
chr7 (863-942)||(7328726-7328805)
chr7 (862-937)||(43027503-43027578)
chr7 (863-922)||(43249958-43250017)
chr7 (862-904)||(8046061-8046103)
chr7 (862-904)||(23191879-23191921)
chr7 (862-912)||(26733279-26733329)
chr7 (782-892)||(11700798-11700909)
chr7 (864-913)||(49107795-49107844)
chr7 (862-898)||(20549780-20549816)
chr7 (862-901)||(2948669-2948708)
chr7 (862-905)||(21828439-21828482)
chr7 (863-898)||(22484014-22484049)
chr7 (863-894)||(28155563-28155594)
chr7 (862-936)||(598160-598233)
chr7 (863-913)||(5235960-5236010)
chr7 (862-904)||(20545270-20545312)
chr7 (864-922)||(26329418-26329476)
chr7 (819-893)||(30731031-30731104)
chr7 (864-913)||(4017830-4017879)
chr7 (865-898)||(6630949-6630982)
chr7 (781-810)||(17852091-17852120)
chr7 (865-898)||(25791642-25791675)
[»] chr6 (32 HSPs)
chr6 (862-922)||(9027143-9027203)
chr6 (814-915)||(10294079-10294181)
chr6 (862-937)||(853893-853968)
chr6 (814-937)||(8365504-8365628)
chr6 (862-922)||(5000660-5000720)
chr6 (863-935)||(12696277-12696348)
chr6 (862-913)||(9629357-9629408)
chr6 (814-922)||(16766662-16766771)
chr6 (862-937)||(30866178-30866253)
chr6 (863-937)||(6389693-6389767)
chr6 (862-912)||(9658854-9658904)
chr6 (862-900)||(19040339-19040377)
chr6 (869-937)||(3398569-3398637)
chr6 (862-922)||(5732544-5732604)
chr6 (862-922)||(7938081-7938141)
chr6 (862-922)||(9107404-9107464)
chr6 (863-911)||(13851712-13851760)
chr6 (863-922)||(7977865-7977924)
chr6 (862-905)||(20371144-20371187)
chr6 (862-915)||(426548-426601)
chr6 (862-903)||(7265627-7265668)
chr6 (862-914)||(8777007-8777059)
chr6 (862-922)||(34073381-34073441)
chr6 (862-922)||(34595099-34595159)
chr6 (782-829)||(426478-426525)
chr6 (782-829)||(5732474-5732521)
chr6 (862-905)||(17841623-17841666)
chr6 (863-937)||(25038106-25038180)
chr6 (862-936)||(31959111-31959184)
chr6 (780-810)||(34073276-34073306)
chr6 (782-823)||(2117134-2117175)
chr6 (862-895)||(10842524-10842557)
[»] scaffold0168 (3 HSPs)
scaffold0168 (782-928)||(21002-21149)
scaffold0168 (782-843)||(21217-21278)
scaffold0168 (782-843)||(21346-21407)
[»] scaffold0306 (1 HSPs)
scaffold0306 (862-938)||(13349-13425)
[»] scaffold0152 (1 HSPs)
scaffold0152 (862-938)||(21902-21978)
[»] chr8 (17 HSPs)
chr8 (814-915)||(22651948-22652050)
chr8 (869-937)||(25192388-25192456)
chr8 (814-920)||(29510289-29510396)
chr8 (862-928)||(926822-926888)
chr8 (862-915)||(27213519-27213572)
chr8 (869-937)||(126390-126457)
chr8 (862-937)||(13436998-13437073)
chr8 (862-905)||(31109552-31109595)
chr8 (862-924)||(24362236-24362298)
chr8 (862-895)||(39954313-39954346)
chr8 (862-902)||(31236611-31236651)
chr8 (862-937)||(4298920-4298994)
chr8 (862-937)||(11944615-11944690)
chr8 (862-924)||(4673459-4673521)
chr8 (862-896)||(27101506-27101540)
chr8 (862-904)||(34897068-34897110)
chr8 (862-895)||(13844630-13844663)
[»] chr2 (23 HSPs)
chr2 (873-937)||(33519736-33519800)
chr2 (862-937)||(20539708-20539783)
chr2 (862-937)||(21782852-21782927)
chr2 (862-912)||(21616737-21616787)
chr2 (864-937)||(19536434-19536507)
chr2 (865-938)||(23717976-23718048)
chr2 (865-938)||(24105648-24105720)
chr2 (831-922)||(4332891-4332981)
chr2 (871-936)||(21624217-21624282)
chr2 (862-922)||(18276486-18276546)
chr2 (782-829)||(19536361-19536408)
chr2 (782-829)||(19574031-19574078)
chr2 (862-897)||(37411278-37411313)
chr2 (864-938)||(14996260-14996333)
chr2 (783-829)||(18255945-18255991)
chr2 (862-900)||(18420468-18420506)
chr2 (863-938)||(21374734-21374810)
chr2 (862-920)||(31018557-31018615)
chr2 (783-829)||(34691770-34691816)
chr2 (783-829)||(34714182-34714228)
chr2 (862-912)||(36409661-36409711)
chr2 (863-924)||(4142875-4142936)
chr2 (863-904)||(21091706-21091747)
[»] chr1 (31 HSPs)
chr1 (862-914)||(6427323-6427375)
chr1 (783-929)||(10572535-10572690)
chr1 (862-922)||(40917716-40917776)
chr1 (862-921)||(398799-398858)
chr1 (862-914)||(2896155-2896207)
chr1 (863-938)||(5376535-5376609)
chr1 (862-937)||(5927374-5927449)
chr1 (782-835)||(48547938-48547991)
chr1 (831-912)||(9709795-9709877)
chr1 (862-906)||(12443494-12443538)
chr1 (862-898)||(17831565-17831601)
chr1 (862-898)||(36878450-36878486)
chr1 (869-924)||(48040503-48040558)
chr1 (862-912)||(34298411-34298461)
chr1 (863-937)||(39130802-39130876)
chr1 (862-915)||(1262856-1262909)
chr1 (862-915)||(1486743-1486796)
chr1 (862-898)||(19562655-19562691)
chr1 (862-922)||(38503285-38503345)
chr1 (863-898)||(609493-609528)
chr1 (862-905)||(6415035-6415078)
chr1 (862-937)||(31014993-31015068)
chr1 (862-905)||(46348417-46348460)
chr1 (863-914)||(48450622-48450673)
chr1 (864-898)||(3490426-3490460)
chr1 (862-896)||(10475011-10475045)
chr1 (862-928)||(15641064-15641130)
chr1 (860-898)||(40285686-40285724)
chr1 (862-915)||(20157384-20157437)
chr1 (862-895)||(21530681-21530714)
chr1 (863-892)||(41877505-41877534)
[»] scaffold0223 (1 HSPs)
scaffold0223 (862-937)||(20122-20197)
[»] scaffold0053 (1 HSPs)
scaffold0053 (862-922)||(8763-8823)
[»] scaffold0007 (1 HSPs)
scaffold0007 (863-922)||(225303-225362)
[»] scaffold0004 (1 HSPs)
scaffold0004 (863-904)||(92790-92831)
[»] scaffold0018 (2 HSPs)
scaffold0018 (862-934)||(178853-178925)
scaffold0018 (863-904)||(192284-192325)
[»] scaffold0003 (1 HSPs)
scaffold0003 (870-922)||(241559-241611)
[»] chr4 (14 HSPs)
chr4 (862-922)||(23293020-23293080)
chr4 (863-898)||(35723420-35723455)
chr4 (864-898)||(17345451-17345485)
chr4 (863-920)||(847918-847975)
chr4 (862-915)||(36635296-36635349)
chr4 (863-922)||(24343472-24343531)
chr4 (863-905)||(7012048-7012090)
chr4 (862-943)||(7670625-7670709)
chr4 (862-912)||(20521883-20521933)
chr4 (864-922)||(20633450-20633508)
chr4 (862-896)||(40613441-40613475)
chr4 (864-933)||(28084475-28084544)
chr4 (864-905)||(30298928-30298969)
chr4 (864-905)||(30327796-30327837)
[»] scaffold0652 (1 HSPs)
scaffold0652 (862-922)||(496-556)
[»] scaffold0279 (1 HSPs)
scaffold0279 (861-937)||(17903-17979)
[»] scaffold0475 (1 HSPs)
scaffold0475 (863-922)||(3281-3340)
[»] scaffold0103 (1 HSPs)
scaffold0103 (862-905)||(51793-51836)
[»] scaffold0697 (1 HSPs)
scaffold0697 (862-895)||(1636-1669)


Alignment Details
Target: chr5 (Bit Score: 689; Significance: 0; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 313 - 1072
Target Start/End: Original strand, 38816178 - 38816932
Alignment:
Q  313 tcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816178 tcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaac 38816277  T
Q  413 agacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaag 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816278 agacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaag 38816377  T
Q  513 aacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttc 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816378 aacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttc 38816477  T
Q  613 cacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgaga 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816478 cacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgaga 38816577  T
Q  713 cttcatattaaaggtgtgagca--gcaccacagatgtcagtctccaacactatcacgattcacgaatataactatgaagcacggacactcctcgaattag 810  Q
    |||||||||||||||||| |||  |  | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38816578 cttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaatcacggacactcctcgaattag 38816677  T
Q  811 ccatgtccgacaccgacaccacaccgacacataattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtg 910  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  38816678 ccatgtccgacaccgacaccacaccgacacataattatactgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtg----- 38816772  T
Q  911 tccggagtccgtattcgtgcttcatagtatatggttaccgttcaattattctattttctcaaattattgcttcaattcaagcaatgatacaaacaatata 1010  Q
      ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38816773 --cggagtccgtattagtgcttcatagtatatggttaccgttcaattattctattttctcaaattattgcttcaattcaaacaatgatacaaacaatata 38816870  T
Q  1011 ccatattacattaattgaattgtaaaacccaactatttttaacctgcagcgactctctgttg 1072  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816871 ccatattacattaattgaattgtaaaacccaactatttttaacctgcagcgactctctgttg 38816932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 503 - 652
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
Q  503 aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa 602  Q
    |||||||||||||||| |||||  ||| ||||||| ||   ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |    
T  38821782 aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca 38821878  T
Q  603 ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca 652  Q
      ||||  |||||||||||||| |||||||||||||||| ||||||||||    
T  38821879 ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca 38821928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 862 - 937
Target Start/End: Original strand, 19820428 - 19820503
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  19820428 gattttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 19820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 782 - 911
Target Start/End: Original strand, 22423764 - 22423895
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtcc-gacaccgacaccacaccgacacata--attataacgaaatatagcgattttctcaaattatt 878  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||| ||||||||| |||  ||||||  ||| ||| | |||||||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtccagacaccgacacgacaccgacatatataattatattgaattat-gtgattttctcaaattatt 22423862  T
Q  879 agcggtgtcggcgtgtcagtatccgtgccgtgt 911  Q
    ||  ||||| | ||||||||||||||| |||||    
T  22423863 agtagtgtcagggtgtcagtatccgtgtcgtgt 22423895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 870 - 937
Target Start/End: Complemental strand, 22013431 - 22013364
Alignment:
Q  870 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  22013431 caaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 863 - 937
Target Start/End: Complemental strand, 42469245 - 42469171
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||||||||||||||| | |||||||||||||| |||||||| ||||| ||| |||||| | ||||||||||||    
T  42469245 attttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttcatag 42469171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 863 - 912
Target Start/End: Original strand, 15410483 - 15410532
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 912  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  15410483 attttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 15410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 863 - 915
Target Start/End: Original strand, 6326332 - 6326384
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    |||||||||||||| ||||| ||||||||||||||| |||||| |||||||||    
T  6326332 attttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccgg 6326384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 864 - 922
Target Start/End: Complemental strand, 15382500 - 15382442
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||    
T  15382500 ttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15382442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 865 - 898
Target Start/End: Complemental strand, 6035505 - 6035472
Alignment:
Q  865 tttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    ||||||||||||||||||||||||||||||||||    
T  6035505 tttctcaaattattagcggtgtcggcgtgtcagt 6035472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 780 - 829
Target Start/End: Complemental strand, 8420124 - 8420075
Alignment:
Q  780 aactatgaagcacggacactcctcgaattagccatgtccgacaccgacac 829  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  8420124 aactatgaagcacggatactcctcgaattaggcgcgtccgacaccgacac 8420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 862 - 915
Target Start/End: Original strand, 21191090 - 21191143
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    |||||| ||||||||||||| |||||||| ||||||| |||||| |||||||||    
T  21191090 gattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccgg 21191143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 898
Target Start/End: Complemental strand, 3966528 - 3966492
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3966528 gattttctcaaattattagcggtgtcggcatgtcagt 3966492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 782 - 834
Target Start/End: Complemental strand, 9929720 - 9929668
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacac 834  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||    
T  9929720 ctatgaagcacagacactcctcgaattagtcgtgtccgataccgacacgacac 9929668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 898
Target Start/End: Complemental strand, 17123073 - 17123037
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    ||||||||||||||||||||||||| |||||||||||    
T  17123073 gattttctcaaattattagcggtgttggcgtgtcagt 17123037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 871 - 915
Target Start/End: Complemental strand, 21522766 - 21522722
Alignment:
Q  871 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||    
T  21522766 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21522722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 871 - 915
Target Start/End: Complemental strand, 21533332 - 21533288
Alignment:
Q  871 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||    
T  21533332 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 898
Target Start/End: Complemental strand, 27144488 - 27144452
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27144488 gatttcctcaaattattagcggtgtcggcgtgtcagt 27144452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 814 - 939
Target Start/End: Original strand, 37328829 - 37328955
Alignment:
Q  814 tgtccgacaccgacaccacaccgacacat--aattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 911  Q
    |||||||||||||||| ||||||||||||  ||||| |  ||| | | | ||||||  ||||||||| || ||||||| || ||||| |||||| |||||    
T  37328829 tgtccgacaccgacacgacaccgacacatgtaattacactgaatttt-gtgatttttacaaattatttgctgtgtcggtgtatcagtgtccgtgtcgtgt 37328927  T
Q  912 ccggagtccgtattcgtgcttcatagta 939  Q
     ||| |||||| | ||||||||||||||    
T  37328928 tcggtgtccgtgtccgtgcttcatagta 37328955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 937
Target Start/End: Complemental strand, 6247647 - 6247572
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| ||||||||||||  |||||||||||||||| | |||  ||||||||| ||||| || |||| |||||||    
T  6247647 gattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtgtccgcatccgtgtttcatag 6247572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 905
Target Start/End: Complemental strand, 14674294 - 14674251
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  14674294 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 14674251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 905
Target Start/End: Complemental strand, 19579726 - 19579683
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||    
T  19579726 gattttctcaaattattagctgtgtcggcgtatcagtgtccgtg 19579683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 922
Target Start/End: Complemental strand, 21137713 - 21137654
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||||| ||||||| || ||||||||||||||| ||||||  |||||||| ||||||    
T  21137713 attttctcagattattaccgatgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgt 21137654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 905
Target Start/End: Complemental strand, 34879375 - 34879332
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||    
T  34879375 gattttctcaaatttttagcggtgccggcgtgtccgtatccgtg 34879332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 863 - 905
Target Start/End: Original strand, 5873548 - 5873590
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  5873548 attttctcaaattattagaggtgtcggcatgtcagtgtccgtg 5873590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 860 - 898
Target Start/End: Complemental strand, 11685966 - 11685928
Alignment:
Q  860 gcgattttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  11685966 gcgactttctcaaattattagcggtgtcggcatgtcagt 11685928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 780 - 810
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  780 aactatgaagcacggacactcctcgaattag 810  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 863 - 893
Target Start/End: Complemental strand, 27932259 - 27932229
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtg 893  Q
    |||||||||||||||||||||||||||||||    
T  27932259 attttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 896
Target Start/End: Original strand, 28588708 - 28588742
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtca 896  Q
    |||||||||||||||||| ||||||||||||||||    
T  28588708 gattttctcaaattattaccggtgtcggcgtgtca 28588742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 869 - 915
Target Start/End: Original strand, 36642803 - 36642849
Alignment:
Q  869 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    ||||||||||| | |||||||||||||||| |||||| |||||||||    
T  36642803 tcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 36642849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 862 - 911
Target Start/End: Original strand, 19552577 - 19552626
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 911  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| |||||    
T  19552577 gattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgt 19552626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 937
Target Start/End: Complemental strand, 30135336 - 30135264
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||| ||||||||||||  ||||||||||||| ||||| ||| ||||||| | ||||||||  |||||||||||    
T  30135336 ttttttcaaattattagttgtgtcggcgtgtcggtatctgtgtcgtgtcc-gtgtccgtatatgtgcttcatag 30135264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 860 - 889
Target Start/End: Original strand, 32766975 - 32767004
Alignment:
Q  860 gcgattttctcaaattattagcggtgtcgg 889  Q
    ||||||||||||||||||||||||||||||    
T  32766975 gcgattttctcaaattattagcggtgtcgg 32767004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 34899975 - 34899746
Alignment:
Q  30 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899975 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa 34899876  T
Q  130 attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899875 attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt 34899776  T
Q  230 atgtgaatttgtgcagatgatatcactgac 259  Q
    ||||||||||||||||||||||||||||||    
T  34899775 atgtgaatttgtgcagatgatatcactgac 34899746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 862 - 937
Target Start/End: Complemental strand, 8383282 - 8383207
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||||||||||||||||||||||||||||||||| | |||||| ||||||| | |||||| | |||||| |||||    
T  8383282 gattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgtccgtgctacatag 8383207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 863 - 922
Target Start/End: Original strand, 24205076 - 24205135
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||    
T  24205076 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 24205135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 871 - 937
Target Start/End: Complemental strand, 8842346 - 8842280
Alignment:
Q  871 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||||||||||||||||| ||||| | |||||| ||| ||||| |||||||| ||||||||||||    
T  8842346 aaattattagcggtgtcggcatgtcaatttccgtgtcgtatccggtgtccgtatccgtgcttcatag 8842280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 906
Target Start/End: Original strand, 5407281 - 5407325
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 906  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||    
T  5407281 gattttctcaaatttttagcggtgtcggcgtgtcggtatccgtgc 5407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 825 - 924
Target Start/End: Original strand, 5441029 - 5441128
Alignment:
Q  825 gacaccacaccgacacataattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgga-gtccgta 923  Q
    ||||| ||||||||||||||||  |  ||| ||| | |||||||||||||| ||||||||| |||||||||||| || ||| |||||||||| |||||||    
T  5441029 gacacaacaccgacacataattccattgaattat-gtgattttctcaaatttttagcggtgacggcgtgtcagtgtctgtgtcgtgtccggatgtccgta 5441127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 812 - 901
Target Start/End: Original strand, 8039818 - 8039908
Alignment:
Q  812 catgtccgacaccgacaccacaccgacacata--attataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatc 901  Q
    |||||||||||||||||| |||||||||||||  |||| |  ||| ||||   |||||||||||||||||||||||| ||||||||| ||||    
T  8039818 catgtccgacaccgacacgacaccgacacatataattacactgaattatata-attttctcaaattattagcggtgttggcgtgtcaatatc 8039908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 28918026 - 28917966
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||| |||||||||||||  ||||||||||||||| |||||| ||||||||| ||||||    
T  28918026 gattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgt 28917966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 863 - 922
Target Start/End: Original strand, 4991002 - 4991061
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||||||| ||||||||||||||| |||||||| |||||| ||||| ||| ||||||    
T  4991002 attttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgt 4991061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 869 - 928
Target Start/End: Original strand, 10335327 - 10335386
Alignment:
Q  869 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 928  Q
    ||||||||||||  |||||||||||||||| |||||| ||||||||| |||||| |||||    
T  10335327 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 10335386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 862 - 937
Target Start/End: Complemental strand, 55401100 - 55401025
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| ||||||||||||  |||||||||| ||||| |||||| ||| ||||| ||||||||  |||||||||||    
T  55401100 gattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttcatag 55401025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 936
Target Start/End: Original strand, 8587055 - 8587129
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 936  Q
    |||||| |||||||| |||  |||||||||||||||| |||||| | ||||||| ||||||||  ||||||||||    
T  8587055 gattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctgtgcttcata 8587129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 863 - 913
Target Start/End: Complemental strand, 9800064 - 9800014
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 913  Q
    |||||||||||||||||| ||||||||||||||||| | |||| |||||||    
T  9800064 attttctcaaattattagaggtgtcggcgtgtcagtgtacgtgtcgtgtcc 9800014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 936
Target Start/End: Original strand, 32429414 - 32429488
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 936  Q
    |||||||| |||||||||||| |||||| |||||| | | ||||  |||||||| |||||||| |||||||||||    
T  32429414 gattttcttaaattattagcgttgtcggagtgtcaatgttcgtgttgtgtccggtgtccgtatacgtgcttcata 32429488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 914
Target Start/End: Original strand, 2620087 - 2620139
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 914  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| | ||||||||    
T  2620087 gattttctcaaatgattagtggtgtcggcgtgtcagtgtccgagtcgtgtccg 2620139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 922
Target Start/End: Original strand, 15796328 - 15796388
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||| ||||||||||| | |||||||||||||| | |||||| ||||||||| ||||||    
T  15796328 gattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15796388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 914
Target Start/End: Original strand, 26492239 - 26492291
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 914  Q
    |||||| |||||||||||||  ||||||||||||||| |||||| ||||||||    
T  26492239 gattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 866 - 905
Target Start/End: Complemental strand, 21720785 - 21720746
Alignment:
Q  866 ttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  21720785 ttctcaaattattatcggtgtcggcgtgtcagtgtccgtg 21720746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 937
Target Start/End: Complemental strand, 25064934 - 25064859
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| |||||| ||||||||||||||||||||| | || ||| ||||||||| ||| |||  |||| |||||||    
T  25064934 gattttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtgtccggtgtctgtacccgtgtttcatag 25064859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 780 - 818
Target Start/End: Original strand, 4466538 - 4466576
Alignment:
Q  780 aactatgaagcacggacactcctcgaattagccatgtcc 818  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgtcc 4466576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 780 - 810
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  780 aactatgaagcacggacactcctcgaattag 810  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 912
Target Start/End: Original strand, 12674535 - 12674585
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 912  Q
    |||||||||||||||||||| ||||||| |||||| | |||||| ||||||    
T  12674535 gattttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtc 12674585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 780 - 818
Target Start/End: Complemental strand, 13807275 - 13807237
Alignment:
Q  780 aactatgaagcacggacactcctcgaattagccatgtcc 818  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  13807275 aactatgaaacacggacactcctcgaattaggcatgtcc 13807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 864 - 938
Target Start/End: Original strand, 14223889 - 14223962
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 938  Q
    |||||||||||||||| | ||||||||||||| || || ||| ||||||| | ||| || |||||||||||||||    
T  14223889 ttttctcaaattattatctgtgtcggcgtgtcggtgtctgtgtcgtgtcc-gtgtctgtgttcgtgcttcatagt 14223962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 905
Target Start/End: Original strand, 3865592 - 3865633
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  3865592 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 3865633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 905
Target Start/End: Complemental strand, 12704030 - 12703989
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  12704030 ttttctcaaattattagtggtgtcggcgtgtccatatccgtg 12703989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 5e-22; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 863 - 937
Target Start/End: Complemental strand, 27945065 - 27944991
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  27945065 attttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 863 - 937
Target Start/End: Complemental strand, 24105702 - 24105629
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| |||||||| | ||||||| ||||||||||||    
T  24105702 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgta-tccgtatccgtgcttcatag 24105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 862 - 915
Target Start/End: Original strand, 11722132 - 11722185
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  11722132 gattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccgg 11722185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 812 - 894
Target Start/End: Original strand, 29787354 - 29787435
Alignment:
Q  812 catgtccgacaccgacaccacaccgacacataattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgt 894  Q
    ||||||| |||||||||  ||||| ||||||||||| |  ||| ||| | |||||||||||||||||||||||||||||||||    
T  29787354 catgtccaacaccgacattacaccaacacataattacactgaattat-gtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 814 - 924
Target Start/End: Complemental strand, 24339716 - 24339605
Alignment:
Q  814 tgtccgacaccgacaccacaccgacacat--aattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 911  Q
    |||||||||||||||| |||||||||| |  ||||| |  ||| ||| | |||||| ||||||||||||| |||||||||||||| | ||| || |||||    
T  24339716 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgt 24339618  T
Q  912 ccggagtccgtat 924  Q
    |||| ||||||||    
T  24339617 ccggtgtccgtat 24339605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 1433479 - 1433419
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||||||||||||||| |||||||||||||||| | |||||| ||||| ||| ||||||    
T  1433479 gattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgt 1433419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 831 - 912
Target Start/End: Complemental strand, 19206107 - 19206025
Alignment:
Q  831 acaccgacacata--attataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 912  Q
    |||||||||||||  ||||||| ||| ||| | |||||||||||||||||||||||||||||||||  || |||||| ||||||    
T  19206107 acaccgacacatataattataatgaattat-gtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtgtc 19206025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 898
Target Start/End: Complemental strand, 32308145 - 32308109
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||||||||||||||||||||||||||||||||||||    
T  32308145 gattttctcaaattattagcggtgtcggcgtgtcagt 32308109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 866 - 937
Target Start/End: Complemental strand, 2034462 - 2034392
Alignment:
Q  866 ttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||||||||||||| ||||||| ||||| |||||||||| |||||| | | ||||||| ||||||||||||    
T  2034462 ttctcaaattattagtggtgtcgacgtgtaagtatccgtgtcgtgtcagta-tccgtatccgtgcttcatag 2034392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 862 - 913
Target Start/End: Original strand, 2425767 - 2425818
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 913  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  2425767 gattttctcaaattattaacggtgccggcgtgtcagtatctgtgtcgtgtcc 2425818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 863 - 942
Target Start/End: Original strand, 7328726 - 7328805
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatat 942  Q
    ||||||||||||||||||| || ||| ||||| | | || ||| ||||| ||| |||||||| |||||||||||||||||    
T  7328726 attttctcaaattattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgtatccgtgcttcatagtatat 7328805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 862 - 937
Target Start/End: Original strand, 43027503 - 43027578
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| ||||||||||||| | |||| ||||||||| |||||| ||||||| | ||||| || ||||||||||||    
T  43027503 gattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtccgcatccgtgcttcatag 43027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 863 - 922
Target Start/End: Complemental strand, 43250017 - 43249958
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||||||||||||| | |||||||||||||||| |||||| | ||||||| ||||||    
T  43250017 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgt 43249958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 904
Target Start/End: Original strand, 8046061 - 8046103
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 904  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  8046061 gattttctcaaattattagtggtgttggcgtgtcagtatccgt 8046103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 904
Target Start/End: Complemental strand, 23191921 - 23191879
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 904  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  23191921 gattttctcaaattattagcggtgtcggcgtatcagtgtccgt 23191879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 912
Target Start/End: Complemental strand, 26733329 - 26733279
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 912  Q
    |||||| |||||||||||||||||||| ||||||||| |||||| ||||||    
T  26733329 gattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtc 26733279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 782 - 892
Target Start/End: Complemental strand, 11700909 - 11700798
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgt--ccgacaccgacaccacaccgacacataattataacgaaatatagcgattttctcaaattatta 879  Q
    ||||||| || |||||||||||| ||||||| |||  |||||||||| || |||| |||||||||||| |  ||| ||| | |||||| |||||||||||    
T  11700909 ctatgaatcagggacactcctcggattagccgtgtgtccgacaccgagacaacacagacacataattacattgaattat-gtgattttgtcaaattatta 11700811  T
Q  880 gcggtgtcggcgt 892  Q
     ||||||| ||||    
T  11700810 acggtgtcagcgt 11700798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 864 - 913
Target Start/End: Complemental strand, 49107844 - 49107795
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 913  Q
    |||||||||||||||||||||||||| |||||||  |||||| |||||||    
T  49107844 ttttctcaaattattagcggtgtcggtgtgtcagagtccgtgtcgtgtcc 49107795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 898
Target Start/End: Complemental strand, 20549816 - 20549780
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||||||||||||||||||||||||||| ||||||||    
T  20549816 gattttctcaaattattagcggtgtcggtgtgtcagt 20549780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 901
Target Start/End: Complemental strand, 2948708 - 2948669
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatc 901  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  2948708 gattttctaaaattatcagcggtgtcggcgtgtcagtatc 2948669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 905
Target Start/End: Original strand, 21828439 - 21828482
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  21828439 gattttctcaaattactaacggtgtcggcgtgtcagtgtccgtg 21828482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 898
Target Start/End: Complemental strand, 22484049 - 22484014
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    ||||||| ||||||||||||||||||||||||||||    
T  22484049 attttctaaaattattagcggtgtcggcgtgtcagt 22484014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 894
Target Start/End: Complemental strand, 28155594 - 28155563
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgt 894  Q
    ||||||||||||||||||||||||||||||||    
T  28155594 attttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 936
Target Start/End: Complemental strand, 598233 - 598160
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 936  Q
    |||||||| ||||||||||||||||||  |||||||| |||||| | |||| || ||||||  ||||||||||||    
T  598233 gattttcttaaattattagcggtgtcgatgtgtcagtgtccgtgtcatgtctggtgtccgt-gtcgtgcttcata 598160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 863 - 913
Target Start/End: Complemental strand, 5236010 - 5235960
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 913  Q
    ||||||| |||||||||||||||||| ||||||||| || ||| |||||||    
T  5236010 attttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtcc 5235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 904
Target Start/End: Original strand, 20545270 - 20545312
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 904  Q
    |||||| |||||||||||||||||| |||||||| ||||||||    
T  20545270 gattttttcaaattattagcggtgttggcgtgtccgtatccgt 20545312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 864 - 922
Target Start/End: Original strand, 26329418 - 26329476
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||||||||||||| || ||||||||||||||| || ||| ||||||| | ||||||    
T  26329418 ttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgt 26329476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 819 - 893
Target Start/End: Complemental strand, 30731104 - 30731031
Alignment:
Q  819 gacaccgacaccacaccgacacataattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtg 893  Q
    |||||| |||| ||||||||||| ||||| |  ||| ||| | ||||||||||||||||| ||||||||||||||    
T  30731104 gacaccaacacgacaccgacacacaattacactgaattat-gtgattttctcaaattattcgcggtgtcggcgtg 30731031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 913
Target Start/End: Original strand, 4017830 - 4017879
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 913  Q
    |||||||||||||||| | ||||||||||||| || |||||| |||||||    
T  4017830 ttttctcaaattattatccgtgtcggcgtgtcggtgtccgtgtcgtgtcc 4017879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 898
Target Start/End: Original strand, 6630949 - 6630982
Alignment:
Q  865 tttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||||||||||||||| |||||||||||||||||    
T  6630949 tttctcaaattattagtggtgtcggcgtgtcagt 6630982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 781 - 810
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  781 actatgaagcacggacactcctcgaattag 810  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 898
Target Start/End: Complemental strand, 25791675 - 25791642
Alignment:
Q  865 tttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||||||||| |||||||||||||||||||||||    
T  25791675 tttctcaaataattagcggtgtcggcgtgtcagt 25791642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 9027203 - 9027143
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  9027203 gattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgt 9027143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 814 - 915
Target Start/End: Complemental strand, 10294181 - 10294079
Alignment:
Q  814 tgtccgacaccgacaccacaccgacacata--attataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 911  Q
    ||||||||||| |||| |||||||||||||  |||| |  ||||||| |||||| |||||||||||||||||| ||||| |||||||||||||| |||||    
T  10294181 tgtccgacaccaacacgacaccgacacatataattacattgaaatat-gcgattatctcaaattattagcggtatcggcatgtcagtatccgtgtcgtgt 10294083  T
Q  912 ccgg 915  Q
    ||||    
T  10294082 ccgg 10294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 862 - 937
Target Start/End: Original strand, 853893 - 853968
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| ||||||||||||  ||||||||||||||| ||||||| ||||||||| |||||||| |||| |||||||    
T  853893 gattttttcaaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattcatag 853968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 814 - 937
Target Start/End: Original strand, 8365504 - 8365628
Alignment:
Q  814 tgtccgacaccgacaccacaccgacacat--aattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 911  Q
    ||||||| |||||||| |||||||||| |  ||||| | |||| ||| | ||| || ||||||||||||  |||||||||||||||| |||||| |||||    
T  8365504 tgtccgataccgacacgacaccgacacttgtaattacaccgaattat-gtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgt 8365602  T
Q  912 ccggagtccgtattcgtgcttcatag 937  Q
    | || |||||||| ||||||||||||    
T  8365603 ctggtgtccgtatccgtgcttcatag 8365628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 862 - 922
Target Start/End: Original strand, 5000660 - 5000720
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  5000660 gattttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgt 5000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 863 - 935
Target Start/End: Complemental strand, 12696348 - 12696277
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcat 935  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| ||||||| | |||||||| ||||||||||    
T  12696348 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc-gtgtccgtatccgtgcttcat 12696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 862 - 913
Target Start/End: Complemental strand, 9629408 - 9629357
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 913  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  9629408 gattttctcaaattattggcggtgtcggcgtgtcaatatccgtgtcgtgtcc 9629357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 814 - 922
Target Start/End: Complemental strand, 16766771 - 16766662
Alignment:
Q  814 tgtccgacaccgacaccacaccgacacat--aattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 911  Q
    |||||||||||||||| |||||||||| |  ||||| |  ||| ||| | |||||| ||||||||||||| |||||||||||||||| ||| || |||||    
T  16766771 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgt 16766673  T
Q  912 ccggagtccgt 922  Q
    |||| ||||||    
T  16766672 ccggtgtccgt 16766662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 862 - 937
Target Start/End: Original strand, 30866178 - 30866253
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||||||||||||||||||||||| || ||||| || || ||| | ||||||| |||||||||||| ||||||||    
T  30866178 gattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtccgtattcgtacttcatag 30866253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 863 - 937
Target Start/End: Complemental strand, 6389767 - 6389693
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||||||||||||||| | |||||||||||| ||| |||||| ||||||||| ||| || | ||||||||||||    
T  6389767 attttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgtccgtgcttcatag 6389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 862 - 912
Target Start/End: Complemental strand, 9658904 - 9658854
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 912  Q
    |||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  9658904 gattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 862 - 900
Target Start/End: Complemental strand, 19040377 - 19040339
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtat 900  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19040377 gattttctcaaattattagcggtgtcggcgtgtcagtat 19040339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 869 - 937
Target Start/End: Complemental strand, 3398637 - 3398569
Alignment:
Q  869 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||||||||||| |||||||||||||||| |||||| ||||| ||  |||||||| | ||||||||||    
T  3398637 tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatccatgcttcatag 3398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 922
Target Start/End: Original strand, 5732544 - 5732604
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||||||||||||||| |||||||||||||||||| ||| || ||||||| | ||||||    
T  5732544 gattttctcaaattattaacggtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgt 5732604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 7938141 - 7938081
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||| ||||||||||||| |||||||||||||||| ||| || ||||||||| ||||||    
T  7938141 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 7938081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 922
Target Start/End: Original strand, 9107404 - 9107464
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||| ||||||||||||| |||||||||||| ||| |||||| ||||||||| ||||||    
T  9107404 gattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgt 9107464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 863 - 911
Target Start/End: Complemental strand, 13851760 - 13851712
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 911  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  13851760 attttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgt 13851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 863 - 922
Target Start/End: Original strand, 7977865 - 7977924
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||| ||||||||||||| |||||||||||||||||||| || ||||||| | ||||||    
T  7977865 attttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgt 7977924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 862 - 905
Target Start/End: Original strand, 20371144 - 20371187
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  20371144 gattttctcaaattattagcggtgtcggcgtgtcaatgtccgtg 20371187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 862 - 915
Target Start/End: Original strand, 426548 - 426601
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| |||||||||    
T  426548 gattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 426601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 862 - 903
Target Start/End: Original strand, 7265627 - 7265668
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccg 903  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  7265627 gattttctcaaattattagcggtgttggcgtgtcagtgtccg 7265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 914
Target Start/End: Original strand, 8777007 - 8777059
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 914  Q
    |||||| ||||||||||||  |||||||||||||||| |||||| ||||||||    
T  8777007 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 8777059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 922
Target Start/End: Original strand, 34073381 - 34073441
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||||||||||||||||| ||| ||| ||||||| |||||| ||||||| | ||||||    
T  34073381 gattttctcaaattattagcgatgttggcatgtcagtgtccgtgtcgtgtccagtgtccgt 34073441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 34595159 - 34595099
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||| ||||||||||||  |||||||||||||| | |||||| ||||||||| ||||||    
T  34595159 gattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 34595099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 782 - 829
Target Start/End: Original strand, 426478 - 426525
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 829  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtccgacaccgacac 426525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 782 - 829
Target Start/End: Original strand, 5732474 - 5732521
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 829  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  5732474 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 5732521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 905
Target Start/End: Original strand, 17841623 - 17841666
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  17841623 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 17841666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 863 - 937
Target Start/End: Original strand, 25038106 - 25038180
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||||||||||||||| |||||||  |||||||||||| ||| ||| | |   |||||||| ||||||||||||    
T  25038106 attttctcaaattattaacggtgtcaacgtgtcagtatctgtgtcgtattcaatgtccgtatccgtgcttcatag 25038180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 936
Target Start/End: Complemental strand, 31959184 - 31959111
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 936  Q
    |||||| ||||||||||||| ||| |||||||||||| | |||| | ||||| | |||||||| |||||||||||    
T  31959184 gattttttcaaattattagctgtgacggcgtgtcagtgttcgtgtcatgtcc-gtgtccgtatccgtgcttcata 31959111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 780 - 810
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  780 aactatgaagcacggacactcctcgaattag 810  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 782 - 823
Target Start/End: Complemental strand, 2117175 - 2117134
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtccgacac 823  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  2117175 ctatgaagcacggacactcctccgattaggcatgtccgacac 2117134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 862 - 895
Target Start/End: Complemental strand, 10842557 - 10842524
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtc 895  Q
    |||||| |||||||||||||||||||||||||||    
T  10842557 gattttttcaaattattagcggtgtcggcgtgtc 10842524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 782 - 928
Target Start/End: Complemental strand, 21149 - 21002
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata--attataacgaaatatagcgattttctcaaattatta 879  Q
    |||||||||||||| ||| |||| ||||| | |||| ||||||||||| | |||||||||||  |||||| |||  ||| | ||||||||||||||||||    
T  21149 ctatgaagcacggatacttctcggattaggcgtgtctgacaccgacacgataccgacacatataattataccgacttat-gtgattttctcaaattatta 21051  T
Q  880 gcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 928  Q
     | ||||| || ||||||| |||||| |||||| || |||||| |||||    
T  21050 accgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgttcgt 21002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 782 - 843
Target Start/End: Complemental strand, 21278 - 21217
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 843  Q
    |||||||||||||| |||||||| ||||| | |||| ||||||||||| | |||||||||||    
T  21278 ctatgaagcacggatactcctcggattaggcgtgtctgacaccgacacgataccgacacata 21217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 782 - 843
Target Start/End: Complemental strand, 21407 - 21346
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 843  Q
    ||||||||||| |||||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21407 ctatgaagcacagacacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 862 - 938
Target Start/End: Complemental strand, 13425 - 13349
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 938  Q
    |||||||||||||||||||  |||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||    
T  13425 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 13349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 862 - 938
Target Start/End: Original strand, 21902 - 21978
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 938  Q
    |||||||||||||||||||  |||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||    
T  21902 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 21978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 814 - 915
Target Start/End: Complemental strand, 22652050 - 22651948
Alignment:
Q  814 tgtccgacaccgacaccacaccgacacat--aattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 911  Q
    |||||||||||||||| |||||||||| |  |||||||  ||| ||| | |||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  22652050 tgtccgacaccgacacgacaccgacacttgtaattatattgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 22651952  T
Q  912 ccgg 915  Q
    ||||    
T  22651951 ccgg 22651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 869 - 937
Target Start/End: Original strand, 25192388 - 25192456
Alignment:
Q  869 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||||||||||| |||||||||||||||| |||||  ||||||||  |||||||||||||||||||||    
T  25192388 tcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 814 - 920
Target Start/End: Original strand, 29510289 - 29510396
Alignment:
Q  814 tgtccgacaccgacaccacaccgacacat--aattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 911  Q
    |||||||||||||||| |||||||||| |  |||||||  ||| | | | |||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  29510289 tgtccgacaccgacactacaccgacacttgtaattatactgaatttt-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 29510387  T
Q  912 ccggagtcc 920  Q
    |||| ||||    
T  29510388 ccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 862 - 928
Target Start/End: Original strand, 926822 - 926888
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 928  Q
    |||||||||||||||||||  |||| ||||||||||| |||||| ||||||||| |||||| |||||    
T  926822 gattttctcaaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 926888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 862 - 915
Target Start/End: Complemental strand, 27213572 - 27213519
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  27213572 gattttctgaaattattagcagtgtcggcgtgtctgtatccgtgtcgtgtccgg 27213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 869 - 937
Target Start/End: Original strand, 126390 - 126457
Alignment:
Q  869 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||||||||||||||| |||||||||||||||||  ||||||| | || ||||| ||||||||||||    
T  126390 tcaaattattagcggtgttggcgtgtcagtatccgtatcgtgtcc-gtgtgcgtatccgtgcttcatag 126457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 862 - 937
Target Start/End: Original strand, 13436998 - 13437073
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| ||||||||||||| |||||||||||||||| ||| || | ||||||| |||| | | ||||||||||||    
T  13436998 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtccatgtccgtgcttcatag 13437073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 862 - 905
Target Start/End: Original strand, 31109552 - 31109595
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  31109552 gattttctcaaattattaacggtgtcggcgtgtcagtgtccgtg 31109595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 924
Target Start/End: Original strand, 24362236 - 24362298
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 924  Q
    |||| ||||||||||||||||||||||||||||| || || ||| ||| ||||| ||||||||    
T  24362236 gattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtat 24362298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 862 - 895
Target Start/End: Original strand, 39954313 - 39954346
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtc 895  Q
    ||||||||||||||||||||||||||||||||||    
T  39954313 gattttctcaaattattagcggtgtcggcgtgtc 39954346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 902
Target Start/End: Original strand, 31236611 - 31236651
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatcc 902  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  31236611 gattttctcaaattattagcagtgtcggcgtgtccgtatcc 31236651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 937
Target Start/End: Original strand, 4298920 - 4298994
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| ||||||||||| | |||||||||||| |||||| ||| ||||||| | |||| ||| ||||||||||||    
T  4298920 gattttttcaaattattaactgtgtcggcgtgttagtatctgtgtcgtgtcc-gtgtccatatccgtgcttcatag 4298994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 937
Target Start/End: Complemental strand, 11944690 - 11944615
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| ||||||||||| | |||||||||||| || ||||||| |||||  || ||||||||  |||||||||||    
T  11944690 gattttatcaaattattaacagtgtcggcgtgttagcatccgtgtcgtgtttggtgtccgtatctgtgcttcatag 11944615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 924
Target Start/End: Original strand, 4673459 - 4673521
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 924  Q
    |||||| ||||||||||| | |||||||||||||||| || ||| ||||||||  ||||||||    
T  4673459 gattttttcaaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtat 4673521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 896
Target Start/End: Complemental strand, 27101540 - 27101506
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtca 896  Q
    |||||| ||||||||||||||||||||||||||||    
T  27101540 gattttttcaaattattagcggtgtcggcgtgtca 27101506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 904
Target Start/End: Complemental strand, 34897110 - 34897068
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 904  Q
    ||||||||||||||||||||||||||| |||||| || |||||    
T  34897110 gattttctcaaattattagcggtgtcgacgtgtctgtgtccgt 34897068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 862 - 895
Target Start/End: Original strand, 13844630 - 13844663
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtc 895  Q
    |||||||||||||||||||| |||||||||||||    
T  13844630 gattttctcaaattattagcagtgtcggcgtgtc 13844663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 873 - 937
Target Start/End: Complemental strand, 33519800 - 33519736
Alignment:
Q  873 attattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| |||||||| ||||||||||||    
T  33519800 attattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttcatag 33519736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 862 - 937
Target Start/End: Original strand, 20539708 - 20539783
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| ||||||||||||| |||||| ||||||||| |||||| ||||||| | |||||||| ||||||||||||    
T  20539708 gattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 862 - 937
Target Start/End: Original strand, 21782852 - 21782927
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||||||||||||||||| |||||||||||||||| |  ||| ||||||| | ||| |||||||||||||||||    
T  21782852 gattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgtattcgtgcttcatag 21782927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 862 - 912
Target Start/End: Complemental strand, 21616787 - 21616737
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 912  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  21616787 gattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 864 - 937
Target Start/End: Original strand, 19536434 - 19536507
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||| ||||||||||||  |||||||||||||| | |||||| ||||||||| ||||||||  |||||||||||    
T  19536434 ttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 19536507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 865 - 938
Target Start/End: Complemental strand, 23718048 - 23717976
Alignment:
Q  865 tttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 938  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||| | ||| |||| |||||||||||||    
T  23718048 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtcc-gtgtctgtatccgtgcttcatagt 23717976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 865 - 938
Target Start/End: Complemental strand, 24105720 - 24105648
Alignment:
Q  865 tttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 938  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||| | ||| |||| |||||||||||||    
T  24105720 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtcc-gtgtctgtatccgtgcttcatagt 24105648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 831 - 922
Target Start/End: Complemental strand, 4332981 - 4332891
Alignment:
Q  831 acaccgacacataattataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||||||||||||| |  ||| ||| | ||||||| |||||||||| | |||||||| ||| |||||| ||||||||||||| ||||||    
T  4332981 acaccgacacataattacattgaattat-gtgattttcccaaattattatcagtgtcggcatgtaagtatctgtgccgtgtccggtgtccgt 4332891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 871 - 936
Target Start/End: Complemental strand, 21624282 - 21624217
Alignment:
Q  871 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 936  Q
    ||||||||||| |||||||||||||||| || ||| ||||| ||| |||||||| || ||||||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtatccgggcttcata 21624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 18276546 - 18276486
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||||||||||||||||||||||||| | ||||| || ||  ||||||||| ||||||    
T  18276546 gattttctcaaattattagcggtgtcggcatatcagtgtctgtatcgtgtccggtgtccgt 18276486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 782 - 829
Target Start/End: Original strand, 19536361 - 19536408
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 829  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  19536361 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 19536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 782 - 829
Target Start/End: Complemental strand, 19574078 - 19574031
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 829  Q
    |||||||||| ||||||||||||||||||   ||||||||||||||||    
T  19574078 ctatgaagcatggacactcctcgaattaggtgtgtccgacaccgacac 19574031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 897
Target Start/End: Original strand, 37411278 - 37411313
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcag 897  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37411278 gattttctcaaattattagcggtgtcggcatgtcag 37411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 864 - 938
Target Start/End: Original strand, 14996260 - 14996333
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 938  Q
    |||| ||||||||||||| |||||||| ||||||| |||||| | ||| | | |||||||| |||||||||||||    
T  14996260 ttttttcaaattattagctgtgtcggcttgtcagtgtccgtgtcatgt-ctgcgtccgtatccgtgcttcatagt 14996333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 783 - 829
Target Start/End: Original strand, 18255945 - 18255991
Alignment:
Q  783 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 829  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtccgacaccgacac 18255991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 900
Target Start/End: Original strand, 18420468 - 18420506
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtat 900  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  18420468 gattttctcaaattattagcagtgttggcgtgtcagtat 18420506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 863 - 938
Target Start/End: Original strand, 21374734 - 21374810
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtg--ccgtgtccggagtccgtattcgtgcttcatagt 938  Q
    ||||| ||||||||||||| |||||||||||| ||| ||||||  | |||||| | |||||||| |||||||||||||    
T  21374734 attttttcaaattattagctgtgtcggcgtgttagtgtccgtgtccggtgtcc-gtgtccgtatccgtgcttcatagt 21374810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 920
Target Start/End: Complemental strand, 31018615 - 31018557
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 920  Q
    |||||||| |||||||||||||||| ||||||||||| ||| || ||| ||||| ||||    
T  31018615 gattttctgaaattattagcggtgttggcgtgtcagtgtccatgtcgtatccggtgtcc 31018557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 783 - 829
Target Start/End: Original strand, 34691770 - 34691816
Alignment:
Q  783 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 829  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34691770 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34691816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 783 - 829
Target Start/End: Original strand, 34714182 - 34714228
Alignment:
Q  783 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 829  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34714182 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 912
Target Start/End: Original strand, 36409661 - 36409711
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 912  Q
    |||||| ||||||||| |||||||||||| ||| |||||||||| ||||||    
T  36409661 gattttttcaaattatcagcggtgtcggcatgtgagtatccgtgtcgtgtc 36409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 863 - 924
Target Start/End: Original strand, 4142875 - 4142936
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 924  Q
    ||||||| ||||| |||| ||||||||||||||||| |||| | ||||| ||| ||||||||    
T  4142875 attttcttaaattgttagtggtgtcggcgtgtcagtgtccgggtcgtgttcggtgtccgtat 4142936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 863 - 904
Target Start/End: Complemental strand, 21091747 - 21091706
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 904  Q
    ||||||| ||||||||||||||||||| |||||||| |||||    
T  21091747 attttcttaaattattagcggtgtcggtgtgtcagtgtccgt 21091706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 862 - 914
Target Start/End: Complemental strand, 6427375 - 6427323
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 914  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  6427375 gattttctcaaattattagcggtgttggcgtgtcagtgtccgtgccgtgtccg 6427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 783 - 929
Target Start/End: Original strand, 10572535 - 10572690
Alignment:
Q  783 tatgaagcacggacactcctcgaattagccatgtcc--------gacaccgacaccacaccgacacat--aattataacgaaatatagcgattttctcaa 872  Q
    |||||||||||||||||||| ||||||| | |||||        |||||| |||| ||||||||||||  ||||| | |||| ||| | |||||||||||    
T  10572535 tatgaagcacggacactccttgaattaggcgtgtccacgtgcctgacaccaacacaacaccgacacatttaattacaccgaattat-gtgattttctcaa 10572633  T
Q  873 attattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtg 929  Q
    |||||||| ||||||||||||||||| | | || ||||||||| |||||||| ||||    
T  10572634 attattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccgtg 10572690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 40917776 - 40917716
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  40917776 gattttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 40917716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 862 - 921
Target Start/End: Original strand, 398799 - 398858
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccg 921  Q
    |||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||    
T  398799 gattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 398858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 862 - 914
Target Start/End: Original strand, 2896155 - 2896207
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 914  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  2896155 gattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccg 2896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 863 - 938
Target Start/End: Original strand, 5376535 - 5376609
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 938  Q
    ||||||| |||||||||||||||||||||||| ||| |||||| |||||||||| || |||| ||||| |||||||    
T  5376535 attttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgtgtccgga-tctgtatacgtgcctcatagt 5376609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 862 - 937
Target Start/End: Original strand, 5927374 - 5927449
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| ||||||||||||| ||||  |||||||||| |||||| ||||||||| |||||||| ||||||| ||||    
T  5927374 gattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttaatag 5927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 782 - 835
Target Start/End: Original strand, 48547938 - 48547991
Alignment:
Q  782 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacacc 835  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||| |||||    
T  48547938 ctatgaagcacggacactcctcgaattaggcgtatccgacaccgacacgacacc 48547991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 831 - 912
Target Start/End: Complemental strand, 9709877 - 9709795
Alignment:
Q  831 acaccgacacata--attataacgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 912  Q
    |||||||||||||  |||| |||||| ||| | ||||||||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  9709877 acaccgacacatataattacaacgaattat-gtgattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtc 9709795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 906
Target Start/End: Original strand, 12443494 - 12443538
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 906  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  12443494 gattttctcaaattattagctgtgtcggcgtgtccgtatccgtgc 12443538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 898
Target Start/End: Original strand, 17831565 - 17831601
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||||||||||||||||||||||||||||||||||||    
T  17831565 gattttctcaaattattagcggtgtcggcgtgtcagt 17831601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 898
Target Start/End: Complemental strand, 36878486 - 36878450
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||||||||||||||||||||||||||||||||||||    
T  36878486 gattttctcaaattattagcggtgtcggcgtgtcagt 36878450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 869 - 924
Target Start/End: Original strand, 48040503 - 48040558
Alignment:
Q  869 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 924  Q
    ||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtat 48040558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 912
Target Start/End: Complemental strand, 34298461 - 34298411
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 912  Q
    ||||||||||||||||||| |||||||| |||||||| |||||| ||||||    
T  34298461 gattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtc 34298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 863 - 937
Target Start/End: Original strand, 39130802 - 39130876
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    ||||||| |||||||||   ||||| |||||||| ||||| || ||||||||| |||||||| ||||||||||||    
T  39130802 attttctaaaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccgtgcttcatag 39130876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 862 - 915
Target Start/End: Complemental strand, 1262909 - 1262856
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    |||||||||||||||||||| ||||||||||||| || | |||| |||||||||    
T  1262909 gattttctcaaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccgg 1262856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 862 - 915
Target Start/End: Original strand, 1486743 - 1486796
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||| ||| |||||    
T  1486743 gattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccgg 1486796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 898
Target Start/End: Original strand, 19562655 - 19562691
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19562655 gattttctcaaattattagcagtgtcggcgtgtcagt 19562691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 38503345 - 38503285
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||||||||||||||||||||||||| |||| ||| |||||| | ||||| | ||||||    
T  38503345 gattttctcaaattattagcggtgtcggtgtgttagtgtccgtgtcatgtcccgtgtccgt 38503285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 898
Target Start/End: Original strand, 609493 - 609528
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||||||||||||||||| |||||||||||||||||    
T  609493 attttctcaaattattagtggtgtcggcgtgtcagt 609528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 905
Target Start/End: Original strand, 6415035 - 6415078
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||    
T  6415035 gattttctcaaataattagcgatgtcggcgtgtcagtgtccgtg 6415078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 937
Target Start/End: Complemental strand, 31015068 - 31014993
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||||||||||||||||| |||| |||| ||||||  ||||| |||| |||| ||| || | ||||||||||||    
T  31015068 gattttctcaaattattagctgtgtaggcgcgtcagtgcccgtgtcgtgcccggtgtctgtgtccgtgcttcatag 31014993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 905
Target Start/End: Original strand, 46348417 - 46348460
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  46348417 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 46348460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 914
Target Start/End: Original strand, 48450622 - 48450673
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 914  Q
    ||||| ||||||||||||| |||| ||||||||||| |||||| ||||||||    
T  48450622 attttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccg 48450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 864 - 898
Target Start/End: Original strand, 3490426 - 3490460
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||||||||||||||||| ||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagt 3490460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 896
Target Start/End: Original strand, 10475011 - 10475045
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtca 896  Q
    ||||||||||| |||||||||||||||||||||||    
T  10475011 gattttctcaagttattagcggtgtcggcgtgtca 10475045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 928
Target Start/End: Original strand, 15641064 - 15641130
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 928  Q
    |||||||| ||||||||||| |||||||| ||||||| |||||| | ||||||  |||||| |||||    
T  15641064 gattttcttaaattattagcagtgtcggcatgtcagtgtccgtgtcatgtccgatgtccgtgttcgt 15641130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 860 - 898
Target Start/End: Original strand, 40285686 - 40285724
Alignment:
Q  860 gcgattttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  40285686 gcgattttctcaaattattagcggtgttggtgtgtcagt 40285724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 862 - 915
Target Start/End: Original strand, 20157384 - 20157437
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    |||||||||| ||||||||||||||||  ||||||||  ||||| |||||||||    
T  20157384 gattttctcacattattagcggtgtcgatgtgtcagtgcccgtgtcgtgtccgg 20157437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 862 - 895
Target Start/End: Complemental strand, 21530714 - 21530681
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtc 895  Q
    |||||||||||||||||| |||||||||||||||    
T  21530714 gattttctcaaattattaacggtgtcggcgtgtc 21530681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 863 - 892
Target Start/End: Original strand, 41877505 - 41877534
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgt 892  Q
    ||||||||||||||||||||||||||||||    
T  41877505 attttctcaaattattagcggtgtcggcgt 41877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 862 - 937
Target Start/End: Complemental strand, 20197 - 20122
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||||  |||||||||||    
T  20197 gattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 20122  T

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Target: scaffold0053 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 8823 - 8763
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||| ||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  8823 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 8763  T

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Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 863 - 922
Target Start/End: Original strand, 225303 - 225362
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||    
T  225303 attttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 225362  T

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Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 863 - 904
Target Start/End: Complemental strand, 92831 - 92790
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 904  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  92831 attttctcaaattattagcggtgtcggcgtgtcagtgtccgt 92790  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 934
Target Start/End: Original strand, 178853 - 178925
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 934  Q
    |||||| ||||||||||||  |||||||||||||||| |||||| ||||||||| |||  ||| |||||||||    
T  178853 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcaatatccgtgcttca 178925  T

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Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 863 - 904
Target Start/End: Original strand, 192284 - 192325
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 904  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  192284 attttctcaaattattaacggtgtcggcgtgtcagtgtccgt 192325  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 870 - 922
Target Start/End: Complemental strand, 241611 - 241559
Alignment:
Q  870 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  241611 caaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 241559  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 862 - 922
Target Start/End: Original strand, 23293020 - 23293080
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||    
T  23293020 gattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 23293080  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 863 - 898
Target Start/End: Original strand, 35723420 - 35723455
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    ||||||||||||||||||||||||||||||||||||    
T  35723420 attttctcaaattattagcggtgtcggcgtgtcagt 35723455  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 864 - 898
Target Start/End: Original strand, 17345451 - 17345485
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagt 898  Q
    |||||||||||||||||||||||||||||||||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagt 17345485  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 863 - 920
Target Start/End: Complemental strand, 847975 - 847918
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 920  Q
    |||||||||||||||||||||  ||||||||||||| || ||| ||||||||| ||||    
T  847975 attttctcaaattattagcggcatcggcgtgtcagtgtctgtgtcgtgtccggggtcc 847918  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 862 - 915
Target Start/End: Complemental strand, 36635349 - 36635296
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 915  Q
    ||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||    
T  36635349 gattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccgg 36635296  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 922
Target Start/End: Complemental strand, 24343531 - 24343472
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||||||||||||| | ||||||||||||| |  |||||| ||||||||| ||||||    
T  24343531 attttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgt 24343472  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 863 - 905
Target Start/End: Complemental strand, 7012090 - 7012048
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    ||||||||||||||||| ||||||||||||||| || ||||||    
T  7012090 attttctcaaattattatcggtgtcggcgtgtcggtgtccgtg 7012048  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 943
Target Start/End: Complemental strand, 7670709 - 7670625
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcg---tgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatatg 943  Q
    |||||||||||| |||||||  ||||||||   ||||||| |||| | |||||||||  ||| ||||||||||||||| ||||||    
T  7670709 gattttctcaaactattagcaatgtcggcgacgtgtcagtttccgcgtcgtgtccggtatccatattcgtgcttcatactatatg 7670625  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 912
Target Start/End: Original strand, 20521883 - 20521933
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 912  Q
    |||||| ||||||||||| |||| ||||||||||||| |||||| ||||||    
T  20521883 gattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtc 20521933  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 864 - 922
Target Start/End: Complemental strand, 20633508 - 20633450
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||| |||||||||||||||||||| ||||||||| |||||  |||||| || ||||||    
T  20633508 ttttttcaaattattagcggtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgt 20633450  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 862 - 896
Target Start/End: Complemental strand, 40613475 - 40613441
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtca 896  Q
    |||||||||||| ||||||||||||||||||||||    
T  40613475 gattttctcaaaatattagcggtgtcggcgtgtca 40613441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 933
Target Start/End: Complemental strand, 28084544 - 28084475
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttc 933  Q
    |||| ||||||| ||||| |||||||||||||||  || ||| ||||||||| ||||||||  |||||||    
T  28084544 ttttttcaaattcttagctgtgtcggcgtgtcagcgtctgtgtcgtgtccggtgtccgtatctgtgcttc 28084475  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 905
Target Start/End: Complemental strand, 30298969 - 30298928
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  30298969 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 30298928  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 905
Target Start/End: Complemental strand, 30327837 - 30327796
Alignment:
Q  864 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  30327837 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 30327796  T

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Target: scaffold0652 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 922
Target Start/End: Original strand, 496 - 556
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    |||||| ||||||||||||| |||||||||| ||||| |||||| ||||| ||| ||||||    
T  496 gattttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgt 556  T

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Target: scaffold0279 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 861 - 937
Target Start/End: Original strand, 17903 - 17979
Alignment:
Q  861 cgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 937  Q
    |||||||||||||||||||||||||| |||||||  || |  ||  ||||||| | |||||||| ||||||||||||    
T  17903 cgattttctcaaattattagcggtgtaggcgtgttggtgtttgtatcgtgtccagtgtccgtatccgtgcttcatag 17979  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 922
Target Start/End: Complemental strand, 3340 - 3281
Alignment:
Q  863 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 922  Q
    ||||||| ||||| |||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  3340 attttctaaaattgttagcattgtcgacgtgtcagtatccgtgtcgtgtccggtgtccgt 3281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 905
Target Start/End: Complemental strand, 51836 - 51793
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 905  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  51836 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 51793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 862 - 895
Target Start/End: Complemental strand, 1669 - 1636
Alignment:
Q  862 gattttctcaaattattagcggtgtcggcgtgtc 895  Q
    |||||||||||||||||| |||||||||||||||    
T  1669 gattttctcaaattattaacggtgtcggcgtgtc 1636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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