View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4332_high_4 (Length: 346)
Name: NF4332_high_4
Description: NF4332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4332_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 256
Target Start/End: Complemental strand, 36097209 - 36096958
Alignment:
| Q |
4 |
atgagacacaaaaaatcaagaaatataccaaggacctcgctcaaaggttcccaaccaacgcccttgtagagaaaggctaccgactccaaaagagaaatgg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36097209 |
atgagacacaaaaaatcaagaaatataccaaggacctcgctcaaaggttcccaaccaacgcccatgtagagaaaggctaccgactccaaaagagaaatgg |
36097110 |
T |
|
| Q |
104 |
ttccactatcaactcatagtgcaaacaaatcagggtgcctcctnnnnnnnnnntttcaatgagaactgggtcttaagaaccaattccttcacatccagag |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
36097109 |
ttccactatcaactcatagtgcaaacaaatcagggtgcctcct-aaaaaaaaatctcaatgagaactggatcttaagaaccaattcctccacatccagag |
36097011 |
T |
|
| Q |
204 |
tcttacgaaaaaatacgagatcattcggtagcctattaatagaaaattttccc |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
36097010 |
tcttacgaaaaaatacgagatcattcggtagcctattaatagagaaatttccc |
36096958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Complemental strand, 36096934 - 36096895
Alignment:
| Q |
280 |
gtataaaaagatatatgaatgctagtgattattatatttt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36096934 |
gtataaaaagatatatgaatgctagtgattattatatttt |
36096895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 36096892 - 36096860
Alignment:
| Q |
301 |
ctagtgattattatatttttaatattgagagta |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36096892 |
ctagtgattattatatttttaatattgagagta |
36096860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 7360837 - 7360869
Alignment:
| Q |
305 |
tgattattatatttttaatattgagagtattat |
337 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
7360837 |
tgattattatatttttaatcttgagagtattat |
7360869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 32485935 - 32485983
Alignment:
| Q |
289 |
gatatatgaatgctagtgattattatatttttaatattgagagtattat |
337 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||| || |||||||||| |
|
|
| T |
32485935 |
gataaatgaatgctcgtgattagtatatttttaattttaagagtattat |
32485983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 54917902 - 54917859
Alignment:
| Q |
294 |
atgaatgctagtgattattatatttttaatattgagagtattat |
337 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
54917902 |
atgaatgcttatgattaatatatttttaatattgagagtattat |
54917859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 36444506 - 36444551
Alignment:
| Q |
164 |
gagaactgggtcttaagaaccaattccttcacatccagagtcttac |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| ||| |||||| |
|
|
| T |
36444506 |
gagaactgggtcttcagaaccaattcctccacatctagaatcttac |
36444551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 11649863 - 11649916
Alignment:
| Q |
77 |
aggctaccgactccaaaagagaaatggttccactatcaactcatagtgcaaaca |
130 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||| ||||||| || ||||| |
|
|
| T |
11649863 |
aggctaccaactccaaaagagaagtggttccaccatccactcataatgaaaaca |
11649916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 13858470 - 13858422
Alignment:
| Q |
289 |
gatatatgaatgctagtgattattatatttttaatattgagagtattat |
337 |
Q |
| |
|
|||| ||||||||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
13858470 |
gataaatgaatgcttatgattaatatgtttttaatattgagagtattat |
13858422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University