View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4332_high_7 (Length: 312)
Name: NF4332_high_7
Description: NF4332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4332_high_7 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 58938 - 58641
Alignment:
| Q |
1 |
ctttcctttcctttcctttgtgtgtgtgcagatgtggattgcaaaggctgagtatgatgagtctggaccatcaattgtgcataggaaatgtttctaaatt |
100 |
Q |
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| T |
58938 |
ctttcctttcctttcctttgtgtgtgtgcagatgtggattgcaaaggctgagtatgatgagtctggaccatcaattgtgcataggaaatgtttctaaatt |
58839 |
T |
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| Q |
101 |
atctgagcaatatggttattgaaggacaagactgctcttttgtaaccctttcattctagcttttgttattctccaggagtttattgtcaaatcatccaat |
200 |
Q |
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| T |
58838 |
atctgagcaatatggttattgaaggacaagactgctcttttgtaaccctttcattctagcttttgttattctccaggagtttattgtcaaatcatccaat |
58739 |
T |
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| Q |
201 |
tcatcttcattattattatatatgtattgataagnnnnnnngacattcatactgcgtcgaaattagctgagactatcaaatgaactaagcatgtgttc |
298 |
Q |
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| T |
58738 |
tcatcttcattattattatatatgtattgataagtttttttgacattcatactgcgtcgaaattagctgagactatcaaatgaactaagcatgtgttc |
58641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 37050025 - 37049953
Alignment:
| Q |
25 |
tgtgcagatgtggattgcaaaggctgagtatgatgagtctggaccatcaattgtgcataggaaatgtttctaa |
97 |
Q |
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| T |
37050025 |
tgtgcagatgtggattgcaaaggcagaatatgatgaatctgggccatcaatagtacacaggaaatgcttctaa |
37049953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 8690691 - 8690748
Alignment:
| Q |
21 |
tgtgtgtgcagatgtggattgcaaaggctgagtatgatgagtctggaccatcaattgt |
78 |
Q |
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| T |
8690691 |
tgtgagtgcagatgtggattgcaaaggcagaatatgatgaatctggtccatcaattgt |
8690748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 69196 - 69266
Alignment:
| Q |
27 |
tgcagatgtggattgcaaaggctgagtatgatgagtctggaccatcaattgtgcataggaaatgtttctaa |
97 |
Q |
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| T |
69196 |
tgcagatgtggattgcaaaggctgaatatgatgaatcaggcccttcaattgttcacaggaaatgcttctaa |
69266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 41388877 - 41388940
Alignment:
| Q |
27 |
tgcagatgtggattgcaaaggctgagtatgatgagtctggaccatcaattgtgcataggaaatg |
90 |
Q |
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| T |
41388877 |
tgcagatgtggattgcaaaggccgagtacgatgaatctggtccttcaattgtacacaggaaatg |
41388940 |
T |
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