View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4332_low_1 (Length: 624)
Name: NF4332_low_1
Description: NF4332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4332_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 14 - 608
Target Start/End: Original strand, 38715171 - 38715765
Alignment:
| Q |
14 |
atatcgagtttttattttgttgaaactctaaagtatagtttttatcgatggtgtctcgccgtgattatatgaaacatcaccatgattacaagaattgaga |
113 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38715171 |
atatggagtttttgttttgttgaaattccaaagtatagtttttatcgacggtgtctcgctgtgattatgtgaaacatcaccatgattacaagaattgaga |
38715270 |
T |
|
| Q |
114 |
agcactttgatcgtagaaactgtctttgaannnnnnnngaagacattatattgaatttcttttaccctatgataaattcctccccaaaaatagctagaat |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38715271 |
agcactttcatcgtagaaactgtctttgaattttttt-gaagacattatattgaatttcttttaacctatgataaattcctccccaaaaatagctagaat |
38715369 |
T |
|
| Q |
214 |
ttactctttgtagacaactacaaatatggagctaagacacacaaaccactcaatgaatccaaattagttgagaatgtaaattcaatccaatgacatgtcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38715370 |
ttactctttgtagacaactacaaatatggagctaagacacacaaaccactcaatgaatccaaattagttgagaatgtaaattcaatccaatgacatgtcc |
38715469 |
T |
|
| Q |
314 |
tctttaaaaagtgccaaatatattcaacaaatagtcaaaagtctaagagcaacataacaagcaatgctattctacccatgttatgatcaccctttgacat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38715470 |
tctttaaaaagtgccaaatatattcaacaaatagtcaaaagtctaagagcaacataacaagcaatgctattctacccatgttatgatcaccctttgacat |
38715569 |
T |
|
| Q |
414 |
aattatacaattaactttttccttttataatattttcaagttttagtgagatgactttaagaaaaagactttacaacaaaaacaaa-ttttgtactgaat |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
38715570 |
aattatacaattaactttttccttttataatattttcaagttttagtgagatgactttaagaaaaagactttacaacagaaacaaatttttgtactgaat |
38715669 |
T |
|
| Q |
513 |
tctaattaaagaattaatttataaacacatcaattatggatttacattgtctgcgataatttaattgtcatccataatttcgtctggagtgtttgg |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
38715670 |
tctaattaaagaattaatttataaacacatcaattatggatttacattgtctgtgataattcaattgtcatccataatttcgtctgaagtgtttgg |
38715765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University