View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4332_low_2 (Length: 437)
Name: NF4332_low_2
Description: NF4332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4332_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 46125996 - 46125586
Alignment:
| Q |
17 |
aatcacgataaaggaaattaaaatgcaatggtaaaacttaccgaatatgctcaagagttccgtgagtgacgttagaaataacccacacagcctccttcct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46125996 |
aatcacgataaaggaaattaaaatgcaatggtaaaacttaccgaatatgctcaagagttccgtgagtgacgttagaaataacccacacagcctccttcct |
46125897 |
T |
|
| Q |
117 |
gatgtcgaagtcggcctttgtgagacggacaagagaactaataagatcggcgtcaatgacatcctgcagaaaagatcataataatattagttatgacaat |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46125896 |
gatgtcgaagtcagcctttgtgagacggacaagagaactaataagatcggcgtcaatgacatcctgcagaaaagatcataataatattagttatgacaat |
46125797 |
T |
|
| Q |
217 |
attctatgtttaaaaggtttagctagtctttccagattagcatatctaactctgttggatgaggtaattggttagcataactccagattttttcaagcaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46125796 |
attctatgtttaaaaggtttagctagtctttccagattagcatatctaactctgttggatgaggtaattggttagcataactccagattttttcaagcaa |
46125697 |
T |
|
| Q |
317 |
atccagttttaattttaaaaatgtgcaaacagcctaatgtctagcctctacccttaattctttattcaataaatgtagactaattcataattatttgtaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46125696 |
atccagttttaattttaaaaatgtgcaaacagcctaatgtctagcctctacccttaattctttattcaataaatgtagactaattcataattatttgtaa |
46125597 |
T |
|
| Q |
417 |
agcgtcctttg |
427 |
Q |
| |
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||||||||||| |
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| T |
46125596 |
agcgtcctttg |
46125586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 46704787 - 46704413
Alignment:
| Q |
17 |
aatcacgataaaggaaattaaaatgcaatggtaaaacttaccgaatatgctcaagagttccgtgagtgacgttagaaataacccacacagcctccttcct |
116 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |||||| ||||||||| |||||| |||||||||||| |
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| T |
46704787 |
aatcatgataaaggaaattaaaatgcaatggtagaacttaccgaatatgctcatgagttccctcagtgacattagaaatagcccacagagcctccttcct |
46704688 |
T |
|
| Q |
117 |
gatgtcgaagtcggcctttgtgagacggacaagagaactaataagatcggcgtcaatgacatcctgcagaaaagatcataataatattagtta----tga |
212 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
46704687 |
aatgtcaaagtcagcctttgtgagacggacaagagaactaataagatcagcatcaatgacatcctgcgcaaaagatcataataatattagttagttgtga |
46704588 |
T |
|
| Q |
213 |
caatattctatgtttaaaaggtttagctagtctttccagattagcatatctaactctgttggatgaggtaattggttagcataactccagattttttcaa |
312 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| || || |
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| T |
46704587 |
caatattctatgtttaaaaggtttagccagtcttaccagattagcatatctaactctgttggatgagatgattaagtagcataactccagatttgtt-aa |
46704489 |
T |
|
| Q |
313 |
gcaaatcca-gttttaattttaaaaatgtgcaaacagcctaatgtctagcctctacccttaattctttattcaata |
387 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||| |
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|
| T |
46704488 |
gcaaatccattttttaattttataaatgtgcaaacagcctaatgtttagcctctacacttaattccttattcaata |
46704413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 46131653 - 46131425
Alignment:
| Q |
17 |
aatcacgataaaggaaattaaaatgcaatggtaaaacttaccgaatatgctcaagagttccgtgagtgacgttagaaataacccacacagcctccttcct |
116 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |||||| ||| ||||| ||||||| ||||||||||| |
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| T |
46131653 |
aatcatgataaaggaaattaaaatgcaatggtagaacttaccgaatatgctcatgagttccctcagtgacattacaaatagcccacacggcctccttcct |
46131554 |
T |
|
| Q |
117 |
gatgtcgaagtcggcctttgtgagacggacaagagaactaataagatcggcgtcaatgacatcctgcagaaaagatcataataatattagttatgacaat |
216 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| || |||| |
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| T |
46131553 |
aatctcgaagtcagcctttgtgagacggacaagagaactaataagatcggcatcaatgacatcctgcagaaatgatcctaataatattagttgtgccaat |
46131454 |
T |
|
| Q |
217 |
attctatgtttaaaaggtttagctagtctt |
246 |
Q |
| |
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||| ||||||||| ||||||||| |||||| |
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| T |
46131453 |
att-tatgtttaagaggtttagccagtctt |
46131425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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