View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4333_high_6 (Length: 341)
Name: NF4333_high_6
Description: NF4333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4333_high_6 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 189873 - 189537
Alignment:
| Q |
1 |
aatgatactggaggcttcaagagctggaaaggtgacctttctattcttttttctccatattatgaatgatcctttatgatatgctgagaatcttacttta |
100 |
Q |
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| T |
189873 |
aatgatactggaggcttcaagagctggaaaggtgacctttctattcttttttctccatattatgaatgatcctttatgatatgctgagaatcttacttta |
189774 |
T |
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| Q |
101 |
ccgcattctaatttgtgaaatatacttaaaaactaagagtaaacatcaattaaagcttgctcagtaagccaataaagaggaagaaaacaaaaatggactt |
200 |
Q |
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| T |
189773 |
ccgcattctaatttgtgaaatacacttaaaaactaagagtaaacatcaattaaagcttgctcagtaagccaataaagaggaagaaaacaaaaatggactt |
189674 |
T |
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| Q |
201 |
gaatgaggtgaactttagacaggaaacattattataagaatctaaacaaaatacatatatatttcatttgaagatgttacgaattactctttcttataat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
189673 |
gaatgaggtgaactttagacaggaaacattattataagaatctaaacaaaatacatatatatttcatttgaagatgttacgaattactctttcttataat |
189574 |
T |
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| Q |
301 |
atccgtatttgcatacatgtatagtctgtggtgctgc |
337 |
Q |
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||||||||||||||||||||||||| |||| |||||| |
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| T |
189573 |
atccgtatttgcatacatgtatagtttgtgttgctgc |
189537 |
T |
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