View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4333_low_1 (Length: 599)
Name: NF4333_low_1
Description: NF4333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4333_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 562; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 37957366 - 37957959
Alignment:
| Q |
1 |
agcttttcgagattttgcaaatgactttcccatgcttcctcttttctgccctgaagaaatttgcccaaaactttaagcgctaccggaaccccgttagcat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37957366 |
agcttttcgagcttttgcaaatgactttcccatgcttcctcttttctgccctgaagaaatttgcccaaaactttaagcgctaccggaaccccgttagcat |
37957465 |
T |
|
| Q |
101 |
aatctaataccttttttgataaactcaaataaggttctattggatggttttgtttaaaagcaaatgaacagaagagatttagagaatcttgagaacacat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
37957466 |
aatctaataccttttttgataaactcacataaggttctattggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccat |
37957565 |
T |
|
| Q |
201 |
ctcctttactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatgattatactcccttggccaaagttactatga |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
37957566 |
ctcatttactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatggttctactcccttggccaaagttactatga |
37957665 |
T |
|
| Q |
301 |
tgtgttccaattaaatcttcaagttgatcagaatctttcacatcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37957666 |
tgtgttccaattaaatcttcaagttgatcagaatctttcacatcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattgg |
37957765 |
T |
|
| Q |
401 |
atttagaggatgtaatgtcttcatctagaagttctgataagtattttcttcgtacatggtctagtccagctctttctatttcttgtttcacatttagaac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37957766 |
atttagaggatgtaatgtcttcatctagaagttctgataagtattttcttcgtacatggtctagtccagctctttcgatttcttgtttcacatttagaac |
37957865 |
T |
|
| Q |
501 |
gatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaattgttgttttgcctgtccctcccatgccccatattcctatg |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37957866 |
gatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaattgttgttttgcctgtccctcccatgccccatattcctatg |
37957959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 37930217 - 37929628
Alignment:
| Q |
1 |
agcttttcgagattttgcaaatgactttcccatgcttcctcttttctgccctgaagaaatttgcccaaaactttaagcgctaccggaaccccgttagcat |
100 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||| || | ||||||| |||| ||| ||||||||||| || |||| ||||| || ||||||| |
|
|
| T |
37930217 |
agcttttcgagcttttgcaactcactttcccatgctttctttgttctgccaagaagcaataatcccaaaactttgagagctaatggaactcctttagcat |
37930118 |
T |
|
| Q |
101 |
aatctaataccttttttgataaactcaaataaggttctattggatggttttgtttaaaagcaaatgaacagaagagatttagagaatcttgagaacacat |
200 |
Q |
| |
|
||| ||||||||||| |||||| |||| ||||| || |||||||| |||||||||||||||| | |||||||||| | ||||||||||||| || ||| |
|
|
| T |
37930117 |
aatttaataccttttctgataagctcacataagtttatattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccat |
37930018 |
T |
|
| Q |
201 |
ctcctttactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatgattatactcccttggccaaa--gttactat |
298 |
Q |
| |
|
|||| | |||| |||||||||||| |||||| |||||| ||||||||||||||||| || ||||||||||| ||||||| ||||||| | ||||| |
|
|
| T |
37930017 |
ctccctaacttcatatatttcatcggcattggcattctcaagcacttgcttgtctctactactcacaatgattctactcccaaggccaaaaaggtactac |
37929918 |
T |
|
| Q |
299 |
gatgtgttccaattaaatcttcaagttgatcagaatctttcacatcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaatt |
398 |
Q |
| |
|
|| ||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||| |||| |||| ||||||||| ||||||| || |
|
|
| T |
37929917 |
ga------ccaattaaaccttcaagttgatctgaatcgttcacgtcatcaagaacaaggagaacctttcctcgttgaagccttggaatgtatgaaaactt |
37929824 |
T |
|
| Q |
399 |
ggatttagaggatgtaatgtcttcatctagaagttctgataagtattttcttcgtacatggtctagtccagctctttctatttcttgtttcacatttaga |
498 |
Q |
| |
|
| || |||||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
37929823 |
gaatccagaggatgtaatgtcttcctctagaagttgtgataagtattttctttgtacatggcgtagtccagctctttctatttcttgttgagcatttaga |
37929724 |
T |
|
| Q |
499 |
acgatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaattgttgttttgcctgtccctcccatgccccatattcctatg |
594 |
Q |
| |
|
| ||||||| |||||||||||||||||| || || ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
37929723 |
atgatgcttttggaactgaactgagttgagaattgatgatagattgcattggcaattgttgttttgcctatccctcccatgccccgtattcctatg |
37929628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 149 - 592
Target Start/End: Original strand, 44644330 - 44644770
Alignment:
| Q |
149 |
tttgtttaaaagcaaatgaacagaagagatttagagaatcttgagaacacatctcctttactttatatatttcatcagcattgccattcttgagcacttg |
248 |
Q |
| |
|
|||||||||| ||| | |||||||||| |||||| || ||| || ||||||||| |||| ||||||| ||||||| ||| ||||||| || || || |
|
|
| T |
44644330 |
tttgtttaaaggcatttaaacagaagagtcgtagagattcatgaaaattcatctccttgacttcatatattccatcagctttgacattcttcagtacctg |
44644429 |
T |
|
| Q |
249 |
cttgtctctgttagtcacaatgattatactcccttggccaaagttactatgatgtgttccaattaaatcttcaagttgatcagaatctttcacatcatca |
348 |
Q |
| |
|
| |||||||| |||||||||||||| |||| ||| | |||| |||||| | | |||||||||||||| ||||||||| |||| || ||||||||| |
|
|
| T |
44644430 |
catgtctctgctagtcacaatgattctactacctggtgcaaacttactaagct---ttccaattaaatctctaagttgatccgaattgttaacatcatca |
44644526 |
T |
|
| Q |
349 |
agaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgtaatgtcttcatctagaagttctgataagtattttc |
448 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| |||||||||||| | || ||||||||| ||| ||| | ||||| || || ||||| | |
|
|
| T |
44644527 |
agaacaaggagagccttagtccatttgagcctttgatcaaatgaaagacataatccagaggatgtgttgttttctcccagaagctcaaatctatatttgc |
44644626 |
T |
|
| Q |
449 |
ttcgtacatggtctagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgatagattgcact |
548 |
Q |
| |
|
|| ||| ||||| |||||| ||| ||||||||||||| |||||||| | |||||| | ||||||| || ||||| | ||| |||| |||||||| |
|
|
| T |
44644627 |
tttgtatatggtgcagtccaaatctctctatttcttgttgaacatttaggatgatgctgttaaaactgaattgggttgccaatttgcgatatattgcact |
44644726 |
T |
|
| Q |
549 |
ggcaattgttgttttgcctgtccctcccatgccccatattccta |
592 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||||| ||||||| |
|
|
| T |
44644727 |
agcaattgttgttttccctattcctcccataccccagattccta |
44644770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 129 - 294
Target Start/End: Complemental strand, 25721669 - 25721504
Alignment:
| Q |
129 |
ataaggttctattggatggttttgtttaaaagcaaatgaacagaagagatttagagaatcttgagaacacatctcctttactttatatatttcatcagca |
228 |
Q |
| |
|
||||| || ||| |||| |||||||||||| ||| | ||| |||||| | || ||||||||| ||||||||||||| |||| ||||||||||| | | |
|
|
| T |
25721669 |
ataagcttttataggatagttttgtttaaaggcatttaaactgaagagttgtactgaatcttgaaaacacatctccttgacttcgtatatttcatctgaa |
25721570 |
T |
|
| Q |
229 |
ttgccattcttgagcacttgcttgtctctgttagtcacaatgattatactcccttggccaaagtta |
294 |
Q |
| |
|
|| ||||||| ||||| || |||||||| |||||| ||||||| |||| || |||||||||||| |
|
|
| T |
25721569 |
atggcattcttaagcacatgtttgtctctactagtcataatgattctactaccctggccaaagtta |
25721504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 594
Target Start/End: Complemental strand, 25721351 - 25721219
Alignment:
| Q |
462 |
tagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaattgttgtt |
561 |
Q |
| |
|
||||||| |||||| ||||||||||| |||||||| | ||||| || ||| |||| |||||||| | | ||||| ||||||| ||||||| ||| |
|
|
| T |
25721351 |
tagtccaactctttttatttcttgttcaacatttagtatcatgctgctagaattgaattgagttgcaaacctgtgatatattgcacgggcaatttcggtt |
25721252 |
T |
|
| Q |
562 |
ttgcctgtccctcccatgccccatattcctatg |
594 |
Q |
| |
|
|||||| | |||||||| ||||| ||||||||| |
|
|
| T |
25721251 |
ttgcctattcctcccataccccaaattcctatg |
25721219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 19869323 - 19869225
Alignment:
| Q |
180 |
tagagaatcttgagaacacatctcctttactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatgattatact |
278 |
Q |
| |
|
||||||||||||| || |||||| || |||| ||||||||||||||||| |||||| || |||||| ||||||| |||||||||||||| |||| |
|
|
| T |
19869323 |
tagagaatcttgaaaattcatctcattcacttcatatatttcatcagcatctatattcttaagtacttgcatgtctctactagtcacaatgattctact |
19869225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 550 - 590
Target Start/End: Original strand, 34727847 - 34727887
Alignment:
| Q |
550 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
590 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34727847 |
gcaattgttgttttgccgatccctcccatgccccatattcc |
34727887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 550 - 590
Target Start/End: Original strand, 34731005 - 34731045
Alignment:
| Q |
550 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
590 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34731005 |
gcaattgttgttttgccgatccctcccatgccccatattcc |
34731045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 18928879 - 18928839
Alignment:
| Q |
550 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
590 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
18928879 |
gcaattgttgttttgccgatccctcccataccccatattcc |
18928839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 550 - 586
Target Start/End: Original strand, 34735604 - 34735640
Alignment:
| Q |
550 |
gcaattgttgttttgcctgtccctcccatgccccata |
586 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34735604 |
gcaattgttgttttgccgatccctcccatgccccata |
34735640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University