View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4334-Insertion-10 (Length: 204)
Name: NF4334-Insertion-10
Description: NF4334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4334-Insertion-10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 31387354 - 31387543
Alignment:
| Q |
1 |
gattgttcagaatcttggtgtacttgaatgactataggagtttggtcttggatttggagtccaagatggccgccactttctcttggtttacccaaataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31387354 |
gattgttcagaatcttggtgtacttgaatgactataggagtttggtcttggatttggagtccaagatggctgccactttctcttggtttacccaaataat |
31387453 |
T |
|
| Q |
101 |
aacgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaactaattttatcttcatcagttgtaaagttaaatatccgc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31387454 |
aacgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaactaattttatcttcatcagttgtaaagttaaatatccgc |
31387543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 31459918 - 31460107
Alignment:
| Q |
1 |
gattgttcagaatcttggtgtacttgaatgactataggagtttggtcttggatttggagtccaagatggccgccactttctcttggtttacccaaataat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| | |
|
|
| T |
31459918 |
gattgttcagaatcttggtgtatttgaatgactataggagtttggtcttggatttgtagtccaagatggccaccactttctcttggtttaaccaaatact |
31460017 |
T |
|
| Q |
101 |
aacgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaactaattttatcttcatcagttgtaaagttaaatatccgc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31460018 |
aacgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaaccaattttatcttcatcagttgtaaagttaaatatccgc |
31460107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 31384065 - 31384163
Alignment:
| Q |
92 |
ccaaataataacgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaactaattttatcttcatcagttgtaaagttaaatatccgc |
190 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||| ||||||| || ||||| | ||||| |||||||| || |||||||||||| |||||| |
|
|
| T |
31384065 |
ccaaataaaaacgaagaatgatgagggagtaactgaaactcactccaacgatcactaacaacaatttaatcttcatgagctgtaaagttaaacatccgc |
31384163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 31462651 - 31462746
Alignment:
| Q |
92 |
ccaaataataacgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaactaattttatcttcatcagttgtaaagttaaatatc |
187 |
Q |
| |
|
|||||||| |||||| || |||||||| |||||||||| |||||||| |||| || |||| || ||||||||||| | ||||||||||| ||||| |
|
|
| T |
31462651 |
ccaaataaaaacgaagaaagatgaggggataactgaaaatcgctccagcaatgaccaaaaacaactttatcttcattaattgtaaagttagatatc |
31462746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 31390478 - 31390575
Alignment:
| Q |
93 |
caaataataacgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaactaattttatcttcatcagttgtaaagttaaatatccgc |
190 |
Q |
| |
|
||||||| | |||| ||||||||||| ||||||||||| | | ||| |||| || |||| || ||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
31390478 |
caaataaaagcgaagaatgatgaggggataactgaaacacaccccatcaatgaccaaaatgaactttatcttcatgagttgtaaaattagatatccgc |
31390575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 31484114 - 31484029
Alignment:
| Q |
101 |
aacgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaactaattttatcttcatcagttgtaaagttaaatat |
186 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||||| ||||||| ||||| || ||||| ||| ||||||| |||||| |
|
|
| T |
31484114 |
aacgaaacatgatgagaaaataactgaaactcgcaccaacaacaactaaaaacaatttaattttcattagtagtaaagtgaaatat |
31484029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 31464615 - 31464701
Alignment:
| Q |
102 |
acgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaactaattttatcttcatcagttgtaaagttaaatatcc |
188 |
Q |
| |
|
|||||| |||||||| |||||| |||| ||||||||||| |||||||| ||| || ||||||||||||||||| |||||||| |
|
|
| T |
31464615 |
acgaaacatgatgagagaataagcaaaacacgctccaacaacagctaaaacttttttaattttcatcagttgtaaagtgaaatatcc |
31464701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University