View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4334-Insertion-15 (Length: 233)
Name: NF4334-Insertion-15
Description: NF4334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4334-Insertion-15 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
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|
| [»] chr3 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 24479727 - 24479950
Alignment:
| Q |
12 |
tagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaatgattg |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
24479727 |
tagcttcacttgaagcaacaaaagtcttctagctacaagtatttagatggaatatgataacaaaaataaagtaaaagtaaatttgaggtataaatgattg |
24479826 |
T |
|
| Q |
110 |
aaccaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatat |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24479827 |
aatcaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagcttaactaaagatgaagcaagcaacttaatcatattgatttatat |
24479926 |
T |
|
| Q |
210 |
gttgctactttctaaatagaggaa |
233 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
24479927 |
gttgctactttctgaatagaggaa |
24479950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 7703008 - 7703223
Alignment:
| Q |
6 |
ctttcgtagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaa |
103 |
Q |
| |
|
||||| ||||||| || ||| ||| ||||||||||||||| |||||||||||| || | ||| |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
7703008 |
ctttcatagcttctctggaaacaacaaaagtcttctagctgcaagtatttagaaggaacgtgagaacaaaaacaaaataaaagtaaatttgaggtataaa |
7703107 |
T |
|
| Q |
104 |
tgattgaaccaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgat |
203 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||| ||| || |||||||| |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
7703108 |
taattgaaccaaatccaacaatcactagaaaattgagatataaaaatggagcagaatttacctttactaaagatgaagcaagcaa---aatcctattgat |
7703204 |
T |
|
| Q |
204 |
ttatatgttgctactttct |
222 |
Q |
| |
|
||| ||||| ||||||||| |
|
|
| T |
7703205 |
ttaaatgtttctactttct |
7703223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 27150759 - 27150555
Alignment:
| Q |
30 |
aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaatgattgaaccaaatccaataatcac |
128 |
Q |
| |
|
||||||||||||||| |||||||||| | | || ||| |||||||||||| |||| ||||||||||||||||||| ||| |||||||||||| |||||| |
|
|
| T |
27150759 |
aaaagtcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaataatttaaccaaatccaacaatcac |
27150660 |
T |
|
| Q |
129 |
taaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgctactttctaaatag |
228 |
Q |
| |
|
||||||||||||||||||||||| || | |||||| |||||||||||||||| |||||||| |||| |||||||||| ||||| || ||||| || || |
|
|
| T |
27150659 |
taaaaaattgagatataaagatggagcaaaatttacctttactaaagatgaaccaagcaacaaaatcctattgatttaagtgttgttaatttctgaacag |
27150560 |
T |
|
| Q |
229 |
aggaa |
233 |
Q |
| |
|
||||| |
|
|
| T |
27150559 |
aggaa |
27150555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 40016937 - 40017006
Alignment:
| Q |
83 |
aaagtaaatttgaggtataaatgattgaaccaaatccaataatcact--aaaaaattgagatataaagat |
150 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
40016937 |
aaagtaaattagaggtataaatgattgaaccaaattcaataataactaaaaaaaattgagatgtaaagat |
40017006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 31481335 - 31481400
Alignment:
| Q |
12 |
tagcttcacttgaagcaaaaaagt-cttctagctacaagtatttagatggcatatgataacaaaaa |
76 |
Q |
| |
|
||||||||||| |||||||||| | |||||| ||||||||||||||| || || ||| |||||||| |
|
|
| T |
31481335 |
tagcttcactttaagcaaaaaaattcttctaactacaagtatttagaaggaatgtgagaacaaaaa |
31481400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 6223895 - 6224124
Alignment:
| Q |
6 |
ctttcgtagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaa |
103 |
Q |
| |
|
||||| ||||||| || ||| ||| ||||||||||||||| |||||||||||| || ||||| |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
6223895 |
ctttcatagcttctctcgaaacaacaaaagtcttctagctgcaagtatttagaaggaatatgggaacaaaaacaaaataaaagtaaatttgaggtataaa |
6223994 |
T |
|
| Q |
104 |
tgattgaaccaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgat |
203 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6223995 |
tgattgaaccaaatccaacaatcactaaaaaattgagatataaagatggagcagaatttacctttactaaagatgaagcaagcaacaaaatcatattgat |
6224094 |
T |
|
| Q |
204 |
ttatatgttgctactttctaaatagaggaa |
233 |
Q |
| |
|
||| |||||||||||| | || ||||||| |
|
|
| T |
6224095 |
ttaagtgttgctactttttgaacagaggaa |
6224124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 17633998 - 17633856
Alignment:
| Q |
6 |
ctttcgtagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaa |
103 |
Q |
| |
|
||||| || ||||||||||||||| |||| |||||||||| |||||||||||| || || ||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
17633998 |
ctttcataacttcacttgaagcaacaaaaatcttctagctgcaagtatttagaaggaatgtgagaacaaaaacaaagtaaaagtaaattttaggtataaa |
17633899 |
T |
|
| Q |
104 |
tgattgaaccaaatccaataatcactaa-aaaattgagatata |
145 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17633898 |
tgattgaaccaaatccaataatcactaaaaaaattgagatata |
17633856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 25338663 - 25338450
Alignment:
| Q |
22 |
tgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaatgattgaaccaaatcc |
119 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||| | | || ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
25338663 |
tgaagcaacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaagtaaaagtaaattgtaggtataaatgattgaaccaaatcc |
25338564 |
T |
|
| Q |
120 |
aataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgctactt |
219 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
25338563 |
aataatcacaaaaaatttgagatataaagatggagtagaatttacctttactaaagatgaagcaagcaacaaaatcctattgatttaagtgttgctactt |
25338464 |
T |
|
| Q |
220 |
tctaaatagaggaa |
233 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
25338463 |
tctaaacagaggaa |
25338450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 37744618 - 37744388
Alignment:
| Q |
6 |
ctttcgtagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaa |
103 |
Q |
| |
|
||||| ||||||| |||||| ||| ||||||||||||| | |||||||||||| || || ||| |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
37744618 |
ctttcatagcttctcttgaaacaacaaaagtcttctaggtgcaagtatttagaaggaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaa |
37744519 |
T |
|
| Q |
104 |
tgattgaaccaaatccaataatcactaaaaaa-ttgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattga |
202 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| |||||||| ||||||| | |||||||| ||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
37744518 |
tgattgaacccaatccaacaatcactaaaaaaattgagatacaaagatggtgcagaatttacctttactaaagatgaagcaagaaacaaaatccaattga |
37744419 |
T |
|
| Q |
203 |
tttatatgttgctactttctaaatagaggaa |
233 |
Q |
| |
|
|||| |||||||||||||| || ||||||| |
|
|
| T |
37744418 |
tttaagtgttgctactttctgaagagaggaa |
37744388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 37750526 - 37750335
Alignment:
| Q |
6 |
ctttcgtagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaa |
103 |
Q |
| |
|
||||| ||||||| || ||| ||| ||||||||||||| | |||||||||||| || || ||| |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
37750526 |
ctttcatagcttctctggaaacaacaaaagtcttctagttgcaagtatttagaaggaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaa |
37750427 |
T |
|
| Q |
104 |
tgattgaaccaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatc |
195 |
Q |
| |
|
| |||||| ||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||| |||| |||| |
|
|
| T |
37750426 |
taattgaatcaaatccaacaatcactaaaaaattgagatataaagatggagcagaatttacctttagtaaagatgaagcaagtaactaaatc |
37750335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 24558557 - 24558340
Alignment:
| Q |
17 |
tcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaatgattgaacca |
114 |
Q |
| |
|
||||||||||||| |||| |||| ||||| ||||||| ||| || || ||| ||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
24558557 |
tcacttgaagcaacaaaaatcttttagctgtaagtatt-agaaggaatgtgagtacaaaaacaaaataaaagtaaatttgaggtataaatgattgaacca |
24558459 |
T |
|
| Q |
115 |
aatccaataatcactaaaaaattgagatataaagatgtag--tagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgtt |
212 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||| || || |||||| ||||||||||| ||||||||||||| |||| |||| ||||| |||| |
|
|
| T |
24558458 |
aatccaatgatctctaaaacattgagatataaagatggagcatataatttacctttactaaaggtgaagcaagcaacaaaatcctattaatttaagtgtt |
24558359 |
T |
|
| Q |
213 |
gctactttctaaatagagg |
231 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
24558358 |
gctactttctgaatagagg |
24558340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 26618675 - 26618446
Alignment:
| Q |
6 |
ctttcgtagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaa |
103 |
Q |
| |
|
||||| ||| |||||||||| ||| ||||||||||||||| |||||||||||| || || ||| | |||||||||| |||| |||||||||||||||||| |
|
|
| T |
26618675 |
ctttcatagtttcacttgaaacaacaaaagtcttctagctgcaagtatttagaaggaatgtgagagcaaaaacaaaataaaagtaaatttgaggtataaa |
26618576 |
T |
|
| Q |
104 |
tgattgaaccaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgat |
203 |
Q |
| |
|
||| ||||| |||||||| | |||||||||||||||||||||||||| || | || ||| || | ||| |||||||||||||||| |||| ||||||| |
|
|
| T |
26618575 |
tgaatgaactaaatccaacattcactaaaaaattgagatataaagatagagcataacttacctctgctagagatgaagcaagcaacaaaatcctattgat |
26618476 |
T |
|
| Q |
204 |
ttatatgttgctactttctaaatagaggaa |
233 |
Q |
| |
|
||| |||||||||||||| || ||||||| |
|
|
| T |
26618475 |
ttaagtgttgctactttctgaacagaggaa |
26618446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 26608108 - 26607894
Alignment:
| Q |
6 |
ctttcgtagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaa |
103 |
Q |
| |
|
||||| |||||||| ||||| ||| ||||||||||||||| ||||||| |||| || || ||| | |||||||||| |||| |||||||| | ||||||| |
|
|
| T |
26608108 |
ctttcatagcttcatttgaaacaacaaaagtcttctagctgcaagtatgtagaaggaatgtgagagcaaaaacaaaataaaagtaaattt-acgtataaa |
26608010 |
T |
|
| Q |
104 |
tgattgaaccaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgat |
203 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |||||||||||||| || |||||||| || |||||||||||||||||||||| |||| ||||||| |
|
|
| T |
26608009 |
tgattgaaccaaatccaacaatcaataaaaaaatgagatataaagatagagcagaatttacctctactaaagatgaagcaagcaacaaaatcctattgat |
26607910 |
T |
|
| Q |
204 |
ttatatgttgctactt |
219 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
26607909 |
ttaagtgttgctactt |
26607894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 26620639 - 26620418
Alignment:
| Q |
6 |
ctttcgtagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagt-aaagtaaatttgaggtataaa |
103 |
Q |
| |
|
||||| |||||||| ||||| ||| ||||||||||||||| |||||||||||| || || ||| | |||||||||| | ||||||||||||||||||||| |
|
|
| T |
26620639 |
ctttcatagcttcatttgaaacaacaaaagtcttctagctgcaagtatttagaaggaatgtgagagcaaaaacaaaatcaaagtaaatttgaggtataaa |
26620540 |
T |
|
| Q |
104 |
tgattgaaccaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaaga-tgaagcaagcaacttaatcatattga |
202 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||| || | |||||| || ||||||||| |||| |||||||| |||| |||||| |
|
|
| T |
26620539 |
tgattgaaccaaatcca---------aaaaaattgatttataaagataaagcataatttacctctactaaagattgaaacaagcaacaaaatcctattga |
26620449 |
T |
|
| Q |
203 |
tttatatgttgctactttctaaatagaggaa |
233 |
Q |
| |
|
|||| |||||||||||| | || ||||||| |
|
|
| T |
26620448 |
tttaagtgttgctactttatgaacagaggaa |
26620418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 8248674 - 8248767
Alignment:
| Q |
83 |
aaagtaaatttgaggtataaatgattgaaccaaatccaataatcact--aaaaaattgagatataaagatgtagtagaatttagctttactaaa |
174 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| || |||||||| ||||||||| ||| || |||||||| ||||| |||| |
|
|
| T |
8248674 |
aaagtaaatttgaggtataagtgattgaaacaaatccaataatcgctaaaaaaaattaagatataaaaatggagcagaatttacctttattaaa |
8248767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 39367646 - 39367443
Alignment:
| Q |
30 |
aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaatgattgaaccaaatccaataatcac |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||| |||||||||||| |||| ||||||||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
39367646 |
aaaagtcttctagctacaagtatttagaaggaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaataattgtaccaaatccaacaatcac |
39367547 |
T |
|
| Q |
129 |
taaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgctactttctaaatag |
228 |
Q |
| |
|
| ||| | |||||||| |||||| || ||||||| ||||||||||||||||||| |||| |||| |||||||||| |||||||||||||| || || |
|
|
| T |
39367546 |
tgaaataatgagatat-aagatggagcagaattttcctttactaaagatgaagcagccaacaaaatcctattgatttaagtgttgctactttctgaacag |
39367448 |
T |
|
| Q |
229 |
aggaa |
233 |
Q |
| |
|
||||| |
|
|
| T |
39367447 |
aggaa |
39367443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 18308787 - 18308961
Alignment:
| Q |
30 |
aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaag-taaatttgaggtataaatgattgaaccaaatccaataatcac |
128 |
Q |
| |
|
||||||||||||||| |||||||||||| | || ||| | ||||||| || |||| |||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
18308787 |
aaaagtcttctagctgcaagtatttagaatgaatgtgagatcaaaaactaaataaaaataaatttgaggtataaattattgaaccaaatccaacaatcac |
18308886 |
T |
|
| Q |
129 |
taaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgat |
203 |
Q |
| |
|
||| ||||||||||||||||||| || |||||||| |||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
18308887 |
taagaaattgagatataaagatggagcagaatttacctttactagagatgaagcaagcagcaaaatcatattgat |
18308961 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 17113501 - 17113613
Alignment:
| Q |
12 |
tagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaatgattg |
109 |
Q |
| |
|
|||||||| ||||| ||| |||| |||||||||| |||||||||| | || || || ||||||||| || |||| ||||||||||||||||||| |||| |
|
|
| T |
17113501 |
tagcttcatttgaatcaacaaaaatcttctagctgcaagtatttaaaaggaat--ga-aacaaaaaccaaataaaagtaaatttgaggtataaataattg |
17113597 |
T |
|
| Q |
110 |
aaccaaatccaataat |
125 |
Q |
| |
|
||||| ||| |||||| |
|
|
| T |
17113598 |
aaccagatctaataat |
17113613 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 24631782 - 24631556
Alignment:
| Q |
7 |
tttcgtagcttcacttgaagcaa-aaaagtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaat |
104 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||||||| || || ||| ||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
24631782 |
tttcgtagcttcacttgaggcaacaaaagtcttctagctgcaagtatttaa--ggaatgtgaggacaaa--caaattaaaagtaaatttgaggtataaat |
24631687 |
T |
|
| Q |
105 |
gattgaaccaaatccaata--atcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattga |
202 |
Q |
| |
|
||||||||||||||||| | ||||||||||| ||||||||||||||| || |||||||| ||||||||||||||||||||| ||| |||| |||||| |
|
|
| T |
24631686 |
gattgaaccaaatccaacacaatcactaaaaatctgagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattga |
24631587 |
T |
|
| Q |
203 |
tttatatgttgctactttctaaatagaggaa |
233 |
Q |
| |
|
|| | |||||| ||||||| || ||||||| |
|
|
| T |
24631586 |
ttcaagtgttgcaactttctgaaaagaggaa |
24631556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 1943174 - 1943316
Alignment:
| Q |
35 |
tcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaatgattgaaccaaatccaataatcac--taa |
131 |
Q |
| |
|
||||||||| |||||||||||| || || ||| |||| ||||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| || |
|
|
| T |
1943174 |
tcttctagccgcaagtatttagaaggaatgtgagaacacaaacaaaataaaagtaaatttgaggtataagtgattgaaccaaatctgataatcacaaaaa |
1943273 |
T |
|
| Q |
132 |
aaaattgagatataaagatgtagtagaatttagctttactaaa |
174 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||| ||||| |
|
|
| T |
1943274 |
aaaattgagatataaagatggagcagaatttaccttttctaaa |
1943316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 31571510 - 31571676
Alignment:
| Q |
69 |
aacaaaaacaaagtaaa-gtaaatttgagg-tataaatgattgaaccaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagct |
166 |
Q |
| |
|
|||||||||||| |||| ||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||| ||| || |
|
|
| T |
31571510 |
aacaaaaacaaaataaaagtaaatttgggggtataaatgattgaactaaatccaacaatcactaaaaaattgagatataaagatgcagaagaacttacct |
31571609 |
T |
|
| Q |
167 |
ttactaaagatgaagcaagcaacttaatcatattgatttatatgttgctactttctaaatagaggaa |
233 |
Q |
| |
|
|||||||||||||| ||| |||| |||| |||||||||| |||||| ||||||| || ||||||| |
|
|
| T |
31571610 |
ttactaaagatgaatcaaacaacaaaatcctattgatttaagtgttgccactttctgaacagaggaa |
31571676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 445805 - 445610
Alignment:
| Q |
12 |
tagcttcacttgaagcaaaaa-agtcttctagctacaagtatttagatggcatatgataacaaaaacaaagtaaa-gtaaatttgaggtataaatgattg |
109 |
Q |
| |
|
|||||||||||||||||| || | |||||||||| |||||||||||| || || | | ||||||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
445805 |
tagcttcacttgaagcaacaacaatcttctagctgcaagtatttagaaggaatgtaagcacaaaaacaaaataaaagtaaatttgaggtataaatatttg |
445706 |
T |
|
| Q |
110 |
aaccaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgattta |
206 |
Q |
| |
|
|||||||||||||| | || |||||||||| ||||||| ||| || | |||||| |||||||||||| |||||| |||| |||| |||||||||| |
|
|
| T |
445705 |
aaccaaatccaatatttaccaaaaaattgaaatataaa-atggagcaaaatttacttttactaaagataaagcaaacaacaaaatcttattgattta |
445610 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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