View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4334-Insertion-4 (Length: 313)
Name: NF4334-Insertion-4
Description: NF4334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4334-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 45352114 - 45352295
Alignment:
| Q |
3 |
ccctttgcaaggttacatagtagatattaacatatcaaatatcaattttaattgtcaaaaataagaatttcgattttaccaatcctccatttcccatttt |
102 |
Q |
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| T |
45352114 |
ccctttacaaggttacatagtagatattaacatatccaatatcaattttaattgtcaaaaaatagaatttcgattttaccaatcttccatttcccatttt |
45352213 |
T |
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| Q |
103 |
gattcctttaaatctatgtttgccaacacctagtgagttattatgtgtcttcttgtttgtttgagtctcctaaaactatttc |
184 |
Q |
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| T |
45352214 |
gattcctttaaatctatgtttgccaacacctagtgagttattatgtgtgttcttgtttgtttgagtctcctaaagctatttc |
45352295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 45361593 - 45361774
Alignment:
| Q |
3 |
ccctttgcaaggttacatagtagatattaacatatcaaatatcaattttaattgtcaaaaataagaatttcgattttaccaatcctccatttcccatttt |
102 |
Q |
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| T |
45361593 |
ccctttacaaggttacatagtagatattaacatatccaatatcaattttaattgtcaaaaaatagaatttcgattttaccaatcttccatttcccatttt |
45361692 |
T |
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| Q |
103 |
gattcctttaaatctatgtttgccaacacctagtgagttattatgtgtcttcttgtttgtttgagtctcctaaaactatttc |
184 |
Q |
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| T |
45361693 |
gattcctttaaatctatgtttgccaacacctagtgagttattatgtgtgttcttgtttgtttgagtctcctaaagctatttc |
45361774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 45353662 - 45353793
Alignment:
| Q |
182 |
ttcagcacacacaataatggcacatgaaatgatgaaaggaatgtccaaacattaataaaagctatttacaaatgttttcgaanggtttctgaaagattgc |
281 |
Q |
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| T |
45353662 |
ttcagcacacacaataatggcacatgaaatgatgaaaggaatgtccaaacattaataaaagctatttacaaatgttttcgaatggtttctgaaagattgc |
45353761 |
T |
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| Q |
282 |
taaaaattgattctaacttgctttatcgtgta |
313 |
Q |
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| T |
45353762 |
taaaaattgattctaacttgcttaatcgtgta |
45353793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 45363141 - 45363272
Alignment:
| Q |
182 |
ttcagcacacacaataatggcacatgaaatgatgaaaggaatgtccaaacattaataaaagctatttacaaatgttttcgaanggtttctgaaagattgc |
281 |
Q |
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| T |
45363141 |
ttcagcacacacaataatggcacatgaaatgatgaaaggaatgtccaaacattaataaaagctatttacaaatgttttcgaatggtttctgaaagattgc |
45363240 |
T |
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| Q |
282 |
taaaaattgattctaacttgctttatcgtgta |
313 |
Q |
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| T |
45363241 |
taaaaattgattctaacttgcttaatcgtgta |
45363272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 45356263 - 45356353
Alignment:
| Q |
182 |
ttcagcacacacaataatggcacatgaaatgatgaaaggaatgtccaaacattaataaaagctatttacaaatgttttcgaanggtttctg |
272 |
Q |
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| T |
45356263 |
ttcagcacacacaaaaatggaacatgaaatgatgaaaggaatgtccaaacattactaaaagctatttacaaatgtttttgaatggtttctg |
45356353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 45370004 - 45370094
Alignment:
| Q |
182 |
ttcagcacacacaataatggcacatgaaatgatgaaaggaatgtccaaacattaataaaagctatttacaaatgttttcgaanggtttctg |
272 |
Q |
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| T |
45370004 |
ttcagcacacacaaaaatggaacatgaaatgatgaaaggaatgtccaaacattactaaaagctatttacaaatgtttttgaatggtttctg |
45370094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 45367266 - 45367339
Alignment:
| Q |
6 |
tttgcaaggttacatagtagatattaacatatcaaatatcaattttaattgtcaaaaataagaatttcgatttt |
79 |
Q |
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| T |
45367266 |
tttgcgagattacataatagatattaacatatcaaatatcaattttaattgtcaaaaaatagaatttcaatttt |
45367339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 45367379 - 45367417
Alignment:
| Q |
80 |
accaatcctccatttcccattttgattcctttaaatcta |
118 |
Q |
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| T |
45367379 |
accaatcctccattttccattttgattcctttaaatcta |
45367417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 45389284 - 45389249
Alignment:
| Q |
261 |
gaanggtttctgaaagattgctaaaaattgattcta |
296 |
Q |
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| T |
45389284 |
gaatggtttctgaaagattgctaaaaattgattcta |
45389249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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