View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4334-Insertion-6 (Length: 288)
Name: NF4334-Insertion-6
Description: NF4334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4334-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 20433658 - 20433547
Alignment:
| Q |
149 |
catatgccttatatctaatttagtattttgttattcatataataaaaacatgaccatggtataaagtgccacagaggagaaaacatagtaacaattttgg |
248 |
Q |
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| T |
20433658 |
catatgccttatatctaatttaatattttgttattcatataataaaaacatg---atggtataaagtgccactgaggagaaaacatagtaacaattttgg |
20433562 |
T |
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| Q |
249 |
taaccatttcccttag |
264 |
Q |
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||||||||||||||| |
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| T |
20433561 |
-aaccatttcccttag |
20433547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 20432927 - 20433027
Alignment:
| Q |
151 |
tatgccttatatctaatttagtattttgttattcatataataaaaac----atgaccatggtataaagtgccacagaggagaaaacatagtaacaatttt |
246 |
Q |
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|||||||| ||||||||||| | ||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
20432927 |
tatgccttgtatctaatttaat-tttagttattcatataatagaaacgtacatgaccatggtataaagtgccaccgaggagaaaacataccaacaatttt |
20433025 |
T |
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| Q |
247 |
gg |
248 |
Q |
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|| |
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| T |
20433026 |
gg |
20433027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20433811 - 20433753
Alignment:
| Q |
1 |
aaangcnatttcattcattgatgaagttcccgttgttgtgcttgaaatttttccgtcat |
59 |
Q |
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||| || ||||||||||||||||||||| ||||||||||||||| |||| |||| |||| |
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| T |
20433811 |
aaaagctatttcattcattgatgaagtttccgttgttgtgcttggaattgttccatcat |
20433753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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