View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4334_high_6 (Length: 232)
Name: NF4334_high_6
Description: NF4334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4334_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 2245625 - 2245815
Alignment:
| Q |
16 |
aatttactatcaaaacgttctcttgggtaggtaagctttcatcattaactgttctggatatatcatcggtcaatattggcagtgacatcccatcatcttt |
115 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||| |||||||||| ||| |||| ||||| || ||||||||||||||||||||||||| | |||| |
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| T |
2245625 |
aatttactatcgaaaccttctcatgggtaggtaagctctcatcattaaatgtcttggaaatatcctcagtcaatattggcagtgacatcccattaccttt |
2245724 |
T |
|
| Q |
116 |
tgcaaatctcacccaactagaatatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttggataatgaacctaacaaattta |
206 |
Q |
| |
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|||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245725 |
tgcaaatctcacccaactagaagtattaagtgcagcaaatagcaatatgaagggtgaaattccatcttggataatgaacctaacaaattta |
2245815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 2138767 - 2138573
Alignment:
| Q |
12 |
aatgaatttactatcaaaacgttctcttgggtaggtaagctttcatcattaactgttctggatatatcatcggtcaatattggcagtgacatcccatcat |
111 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||||| |||||||||||||| || |||| |||||||| ||||| |||||||||||||| |||| || |
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|
| T |
2138767 |
aatgaatttactatcgaaaccatctcgtgggtaggtaggctttcatcattaattggcttggacatatcatcagtcaaaattggcagtgacattccattat |
2138668 |
T |
|
| Q |
112 |
cttttgcaaatctcacccaactagaatatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttggataatgaacctaacaaattta |
206 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
2138667 |
cttttgcaaatctcacccagctacaatttttaagtgcaaaaaatagcaatattaagggtgaaattccgtcttggataatgaacctaacaaattta |
2138573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 2098883 - 2098674
Alignment:
| Q |
12 |
aatgaatttactatcaaaacgttctcttgggtaggtaagctttcatcattaactgttctggatatatcatcggtcaatattggcagtgacatcccatcat |
111 |
Q |
| |
|
|||||||||||||| | || ||||| ||||||||||||||||||||||||| | |||| ||||| || ||||||||||||||||| ||||||| || |
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|
| T |
2098883 |
aatgaatttactattgagacattctcatgggtaggtaagctttcatcattaatttccttggagatatcctcagtcaatattggcagtgagatcccattat |
2098784 |
T |
|
| Q |
112 |
cttttgcaaatctcacccaactagaatatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttggataatgaacctaacaaatttaaatgc |
211 |
Q |
| |
|
|||||||||||||||| || |||| | ||||| ||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| || |
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| T |
2098783 |
cttttgcaaatctcactcagctagtacttttaagtgcagaaaatagcaatataaagggtgaaataccatcttggattatgaacctaacaaatttagttgt |
2098684 |
T |
|
| Q |
212 |
cttggaccta |
221 |
Q |
| |
|
|||||||||| |
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|
| T |
2098683 |
cttggaccta |
2098674 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 2126164 - 2125970
Alignment:
| Q |
12 |
aatgaatttactatcaaaacgttctcttgggtaggtaagctttcatcattaactgttctggatatatcatcggtcaatattggcagtgacatcccatcat |
111 |
Q |
| |
|
|||||||||||||| | || |||| ||||| |||||||| |||||||||||| |||||||||| || ||||||||||||||||||||||||| || |
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|
| T |
2126164 |
aatgaatttactattgagaccatctcatgggtcggtaagctctcatcattaacttccttggatatatcctcagtcaatattggcagtgacatcccattat |
2126065 |
T |
|
| Q |
112 |
cttttgcaaatctcacccaactagaatatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttggataatgaacctaacaaattta |
206 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||| |||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||| |
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|
| T |
2126064 |
cttttgcaaatctcacccaactagaacttctaggtgcaacaaatagcaatataaagggtgaaattccatcatggataatgaatctagcaaattta |
2125970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 2691796 - 2691990
Alignment:
| Q |
12 |
aatgaatttactatcaaaacgttctcttgggtaggtaagctttcatcattaactgttctggatatatcatcggtcaatattggcagtgacatcccatcat |
111 |
Q |
| |
|
|||||||||||||| | || |||| |||||||||||||| |||||| || || |||||||||| || ||||||||||||||||||||||||| || |
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|
| T |
2691796 |
aatgaatttactattgagaccatctcatgggtaggtaagctctcatcaatagttggcttggatatatcctcagtcaatattggcagtgacatcccattat |
2691895 |
T |
|
| Q |
112 |
cttttgcaaatctcacccaactagaatatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttggataatgaacctaacaaattta |
206 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
2691896 |
cttttgcaaatctcactaaactagaagtattaattgcaagaaatagcaatataaagggagaaattccttcttggataatgaacctaacaaattta |
2691990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 2073178 - 2072985
Alignment:
| Q |
12 |
aatgaatttactatcaaaacgttctcttgggtaggtaagctttcatcattaactgttctggatatatcatcggtcaatattggcagtgacatcccatcat |
111 |
Q |
| |
|
|||||||||||||| | || ||||| |||||||||||||| || ||||||| || |||||||||| || ||||| |||| |||| |||||| || || |
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|
| T |
2073178 |
aatgaatttactattgagaccttctcatgggtaggtaagctctcgtcattaattgccttggatatatcctcagtcaaaattgacagtaacatcc-attat |
2073080 |
T |
|
| Q |
112 |
cttttgcaaatctcacccaactagaatatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttggataatgaacctaacaaattta |
206 |
Q |
| |
|
|||||||||||||||| || |||| | ||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2073079 |
cttttgcaaatctcactcagctagtacttttaagtgcagcaaatagcaatataaagggtgaaattccatcttggattatgaacctaacaaattta |
2072985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 2056775 - 2056584
Alignment:
| Q |
12 |
aatgaatttactatcaaaacgttctcttgggtaggtaagctttcatcattaactgttctggatatatcatcggtcaatattggcagtgacatcccatcat |
111 |
Q |
| |
|
|||||||||||||| |||| || || |||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| || |
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|
| T |
2056775 |
aatgaatttactattgaaaccttttcatgggtaggtaggctttcatcattaactggattggatatatcatcagtcaatattggcagtggaatcccattat |
2056676 |
T |
|
| Q |
112 |
cttttgcaaatctcacccaactagaa-tatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttggataatgaacctaacaaattta |
206 |
Q |
| |
|
|||||||||||||||| |||||| ||||| | |||| |||||||| ||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2056675 |
cttttgcaaatctcac---gctagaagtattt-attgcaagaaatagcagtataatgggtgaaattccatcttggataatgaaccaaacaaattta |
2056584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 2066071 - 2065890
Alignment:
| Q |
12 |
aatgaatttactatcaaaacgttctcttgggtaggtaagctttcatcattaactgttctggatatatcatcggtcaatattggcagtgacatcccatcat |
111 |
Q |
| |
|
|||||||||||||| | || ||||| |||||||||||||| |||||||||| ||| |||| ||||| || ||||||||||||||||||||| ||| || |
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|
| T |
2066071 |
aatgaatttactattgagaccttctcatgggtaggtaagctctcatcattaaatgtcttggacatatcctcagtcaatattggcagtgacatctcattat |
2065972 |
T |
|
| Q |
112 |
cttttgcaaatctcacccaactagaatatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttggataatgaa |
193 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||| |||| || ||||||| |||||| |||||| | | ||||||||||| |
|
|
| T |
2065971 |
cttttgcaaatctcacccagctacaatttttaggtgcaaccgattgcaatataaagggtcaaattctaccatggataatgaa |
2065890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 1696739 - 1696851
Alignment:
| Q |
87 |
aatattggcagtgacatcccatcatcttttgcaaatctcacccaactagaatatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttgga |
186 |
Q |
| |
|
||||||||||| || || |||| |||||||||||| |||| ||| ||| |||||||| |||| |||||||||| | | |||||||||||||||||||| |
|
|
| T |
1696739 |
aatattggcagcgatataccattatcttttgcaaacctcatccacctacaatatttacgcgcagaaaatagcaatttaaggggtgaaattccatcttgga |
1696838 |
T |
|
| Q |
187 |
taatgaacctaac |
199 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1696839 |
taatgaacctaac |
1696851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 2114254 - 2114162
Alignment:
| Q |
101 |
catcccatcatcttttgcaaatctcacccaactagaatatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttggataatgaa |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| | |||||| ||||| | || ||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
2114254 |
catcccattatcttttgcaaatctcacccagctacactatttagatgcaacagattgcaatataaagggtcaaattccatcatggataatgaa |
2114162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 2135453 - 2135349
Alignment:
| Q |
102 |
atcccatcatcttttgcaaatctcacccaactagaatatttaaatgcagtaaatagcaatatgaagggtgaaattccatcttggataatgaacctaacaa |
201 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||||| |||| |||| ||||||| |||| |||||| |||||||||||||| ||||||| ||||| | |
|
|
| T |
2135453 |
atcccattatctttcgcaaatctcacgcaactagaagtattaagtgcaacaaatagctatataaagggtcaaattccatcttggttaatgaatctaacca |
2135354 |
T |
|
| Q |
202 |
attta |
206 |
Q |
| |
|
||||| |
|
|
| T |
2135353 |
attta |
2135349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 2135518 - 2135468
Alignment:
| Q |
12 |
aatgaatttactatcaaaacgttctcttgggtaggtaagctttcatcatta |
62 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
2135518 |
aatgaatttactattgaaaccttctcatgggtagataagctttcatcatta |
2135468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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