View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4334_low_1 (Length: 418)
Name: NF4334_low_1
Description: NF4334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4334_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 2620965 - 2620564
Alignment:
| Q |
1 |
gtagtcattgtttgtaataattaatttagggaaagtcaactattgacgtctccttgaatcatctttataatttgatttgtgctaagatcttacattttga |
100 |
Q |
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| T |
2620965 |
gtagtcattgtttgtaataattaatttagggaaagtcaactattgacgtctccttgaatcatctttataatttgatttgtgctaagatcttacattttga |
2620866 |
T |
|
| Q |
101 |
atttatagtcactaaaataattgatnnnnnnnnnnggaattatttgttcttcttatgcctcagagtcgttgtcatttattccgttggcaaataaaagtca |
200 |
Q |
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| T |
2620865 |
atttatagtcactaaaatacttgataaaaagaaa-ggaattatttgttcttcttatgcctgagagtcgttgtcatttattccgttggcaaataaaagtca |
2620767 |
T |
|
| Q |
201 |
atatattttaagtagtgaatttttagctactagactacttgaccaaacacaaaagttaatatattttaagttttatagctccacggcatcatcagtggaa |
300 |
Q |
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| T |
2620766 |
atatattttaagaagtgaatttctaaccactagactacttaaccaaacacaaaagttaatatattttaagttttatagttccacggcatcaccagtggaa |
2620667 |
T |
|
| Q |
301 |
tttaaatatgttagtttatctttaactctttaccatagttctaaattgcactctacaatcgcaattatgttgtggccacaacataaagattttagaggtt |
400 |
Q |
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| T |
2620666 |
tttaaatatgttagtttatctttaactctttaccatagttctaaattgcactctacagtcgcaattatattgtggccacaacataaagattttagaggtt |
2620567 |
T |
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| Q |
401 |
ttt |
403 |
Q |
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| T |
2620566 |
ttt |
2620564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 2589365 - 2589271
Alignment:
| Q |
1 |
gtagtcattgtttgtaataattaatttagggaaagtcaactattgacgtctccttgaatca--tctttataatttgatttgtgctaagatcttac |
93 |
Q |
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||||||||| ||| |||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||| |
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| T |
2589365 |
gtagtcattatttttaataattaatttaggaaaagacaactactgacgtctccttgaatcaattctttataatttgatttgtgcgaagaacttac |
2589271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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