View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4334_low_3 (Length: 338)
Name: NF4334_low_3
Description: NF4334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4334_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 15 - 327
Target Start/End: Complemental strand, 41797413 - 41797101
Alignment:
| Q |
15 |
tcattttctacatgaaaactctctacctctatttcagggggctaagccaccgaattattagacccacttcattattgactatataatgtattattgaaat |
114 |
Q |
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| T |
41797413 |
tcattttctacatgaaaactctctacctctatttcagggggctaagccaccgaattattagacccacttcattattgactatataatgtattattgatat |
41797314 |
T |
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| Q |
115 |
gatcaaaagaaaaatcaatatcaattgtcttcatcaatgcgattccaacatacacgttcatgtgcttagttttacacatcagaaaatgacttcttctaaa |
214 |
Q |
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| T |
41797313 |
gatcaaaggaaaaatcaatatcaattgtcttcatcaatgcgattccaacatacacgttcatgtgcttagttttacacatcagaaaatgacttcttctaaa |
41797214 |
T |
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| Q |
215 |
ccataccaatcgatcaataatttatctctataattataagagccacccttgccacatgatacaaccaaacgtggactcataacattacaacgtagctttt |
314 |
Q |
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| T |
41797213 |
ccataccaatcgatcaataatttatctctataattataagagccacccttgccacatgatacaaccaaacgtggactcataacattacaacgtagctttt |
41797114 |
T |
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| Q |
315 |
cattattcttcat |
327 |
Q |
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| T |
41797113 |
cattattcttcat |
41797101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 41763104 - 41763004
Alignment:
| Q |
227 |
atcaataatttatctctataattataagagccacccttgccacatgatacaaccaaacgtggactcataacattacaacgtagcttt--tcattattctt |
324 |
Q |
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| T |
41763104 |
atcaataatttatct--aaaattataagggacgcccttgccacatgatacaaccacacgtggattcataacattgctatgtagctttgatcattattctt |
41763007 |
T |
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| Q |
325 |
cat |
327 |
Q |
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||| |
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| T |
41763006 |
cat |
41763004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 41793647 - 41793492
Alignment:
| Q |
72 |
ttagacccacttcattattgactatataatgt--attattgaaatgatcaaaagaaaaatcaatatcaattg----tcttcatcaat--gcgattccaac |
163 |
Q |
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| T |
41793647 |
ttagacccacttcattattgagtataaaatatgcattattggtacgatcaaatgaaaaatca-tatcaattgcatgtcttcatcaatatgcaattcatgc |
41793549 |
T |
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| Q |
164 |
atacacgttcatgtgcttagtttta---cacatcagaaaatgacttcttctaaaccat |
218 |
Q |
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| T |
41793548 |
atacacgttcatgtgcttagttttatactacatcagaaaatgacttc-tctaaaccat |
41793492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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