View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4334_low_5 (Length: 246)
Name: NF4334_low_5
Description: NF4334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4334_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 50760337 - 50760565
Alignment:
| Q |
1 |
ccagatgaaactgtaagtgtcttgttttagcatacagtacttctaaacttaagactgaagagtgactagagtatgttaataggagcaattttgctcatag |
100 |
Q |
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| T |
50760337 |
ccagatgaaactgtaagtgtcttgttttagcatacagtacttctaaacttaagactgaagagtgactagagtatgttaataggagcaattttgctcatag |
50760436 |
T |
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| Q |
101 |
tttaagaaatctagaaagaaaaagataacatcaacttgtggggactatctgcattatgagaactttaggagcttgttttgattgacaacttattttgcag |
200 |
Q |
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| T |
50760437 |
tttaagaaatctagaaagaaaaagataacatcaacttgtggggactatctgcattatgagaactttaggagcttgttttgattgacaacttattttgcag |
50760536 |
T |
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| Q |
201 |
cttgtagtataagtgcttatgaataagct |
229 |
Q |
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| T |
50760537 |
cttgtagtataagtgcttatgaataagct |
50760565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 44295230 - 44295401
Alignment:
| Q |
1 |
ccagatgaaactgtaagtgtcttgttttagcatacagtacttctaaacttaagactgaagagtgactagagtatgttaataggagcaattttgctcatag |
100 |
Q |
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| T |
44295230 |
ccagatgaagctgtaagtgtctcgttttagcatacagtacttctaaacttaagactgaagggtgactaaagtatgttagtaggaacaattttgctcatag |
44295329 |
T |
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| Q |
101 |
tttaagaaatctagaaagaaaaagataa-catcaacttgtggggactatctgcattatgagaactttaggag |
171 |
Q |
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| T |
44295330 |
tttaagaaatctagaaagaaaaagataaccatcaacttgtggggactatctgtattatgagaactttaggag |
44295401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 44295428 - 44295483
Alignment:
| Q |
174 |
tgttttgattgacaacttattttgcagcttgtagtataagtgcttatgaataagct |
229 |
Q |
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| T |
44295428 |
tgttttgattgacatcttattttgcagcttgtagtataagcgcttgtgaataagct |
44295483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 18857577 - 18857519
Alignment:
| Q |
171 |
gcttgttttgattgacaacttattttgcagcttgtagtataagtgcttatgaataagct |
229 |
Q |
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|||||||| ||| |||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
18857577 |
gcttgtttggataaacaacttattttgcagcttgtagtgtaagtgtttatgaataagct |
18857519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 7644445 - 7644401
Alignment:
| Q |
185 |
acaacttattttgcagcttgtagtataagtgcttatgaataagct |
229 |
Q |
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|||||||||||| | |||| ||| ||||||||||||||||||||| |
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| T |
7644445 |
acaacttatttttcggcttatagcataagtgcttatgaataagct |
7644401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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