View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4334_low_6 (Length: 239)
Name: NF4334_low_6
Description: NF4334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4334_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 43914665 - 43914445
Alignment:
| Q |
19 |
aagccgcacttcaagaggttggtggagattcaggagggccaacgcttgcagtagagatagctttgaggtcaatggcagatgataatggtgctgttgaatt |
118 |
Q |
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| T |
43914665 |
aagccgcacttcaagagcttggtggagattcaggagggccaacgcttgcagtcgagatagctttgaggtcaatggcagatgataacggtgctgttgaatt |
43914566 |
T |
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| Q |
119 |
ggaagagtttgttgtaagtgggaaatcaagaattatggttttgaatatagaaaggacccgtctcttgagagaatttcctgaaactgcacatcatcatcag |
218 |
Q |
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| T |
43914565 |
ggaagagtttgttgtaagtgggaaatcaagaattatggttttgaatatagaaagggcccgtctcttgagagaatttcctgaaactgcacatcatcatcag |
43914466 |
T |
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| Q |
219 |
cagcaaaatgaatcgagtctt |
239 |
Q |
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| T |
43914465 |
caacaaaatgaatcgagtctt |
43914445 |
T |
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Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 42837623 - 42837828
Alignment:
| Q |
19 |
aagccgcacttcaagaggttggtggagattcaggagggccaacgcttgcagtagagatagctttgaggtcaatggcagatgataatggtgctgttgaatt |
118 |
Q |
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|||| ||| |||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
42837623 |
aagctgcatttcaagagcttgctggagattcaggagggccaacgcttgcagtcgagatagctttgagatcaatggcagatgataatggtgcagttgaatt |
42837722 |
T |
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| Q |
119 |
ggaagagtttgttgtaagtgggaaatcaagaattatggttttgaatatagaaaggacccgtctcttgagagaatttcctgaaactgcacatcatcatcag |
218 |
Q |
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| T |
42837723 |
ggaagagtttgctgtaagtggtaaatcaagaattatggttttgaatatagataggacccgtctcttgagacaattgcctgaaactgcacaacatcagctg |
42837822 |
T |
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| Q |
219 |
cagcaa |
224 |
Q |
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| T |
42837823 |
cagcaa |
42837828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 8636012 - 8635894
Alignment:
| Q |
19 |
aagccgcacttcaagaggttggtggagattcaggagggccaacgcttgcagtagagatagctttgaggtcaatggcagatgataatggtgctgttgaatt |
118 |
Q |
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|||| |||||||||||| ||| |||||||||| ||| |||||| ||||| || ||||||||||||||||||||||| ||| || ||||||| |||||||| |
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| T |
8636012 |
aagctgcacttcaagagcttgctggagattcaagagagccaacacttgcggttgagatagctttgaggtcaatggctgataatgatggtgccgttgaatt |
8635913 |
T |
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| Q |
119 |
ggaagagtttgttgtaagtg |
138 |
Q |
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| T |
8635912 |
ggaagag-ttgttgtaagtg |
8635894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 8623081 - 8623145
Alignment:
| Q |
74 |
gatagctttgaggtcaatggcagatgataatggtgctgttgaattggaagagtttgttgtaagtg |
138 |
Q |
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| T |
8623081 |
gatagctttgaggtcaatggctgataataatggtgccgttgaattggaagagtttgttttaagtg |
8623145 |
T |
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