View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4335_low_1 (Length: 240)

Name: NF4335_low_1
Description: NF4335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4335_low_1
NF4335_low_1
[»] chr1 (5 HSPs)
chr1 (18-240)||(33768269-33768491)
chr1 (19-133)||(33761782-33761896)
chr1 (22-126)||(33771222-33771326)
chr1 (178-236)||(33771083-33771141)
chr1 (181-236)||(33761684-33761739)
[»] chr7 (3 HSPs)
chr7 (19-104)||(29463911-29463996)
chr7 (19-104)||(19891076-19891161)
chr7 (19-51)||(19769618-19769650)
[»] chr8 (2 HSPs)
chr8 (19-83)||(26397147-26397211)
chr8 (19-112)||(1094274-1094367)
[»] chr4 (1 HSPs)
chr4 (19-112)||(49464267-49464360)
[»] chr2 (1 HSPs)
chr2 (29-110)||(28639394-28639475)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 33768491 - 33768269
Alignment:
Q  18 cggtggtcttcaagttcttcatcagaatcaatgggtcgacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgat 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33768491 cggtggtcttcaagttcttcatcagaatcaatgggtccacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgat 33768392  T
Q  118 gttaaatgtaaacactaagtaattatttctgtactgtcttgtgacttttaatttaatagagattacatttatcaattttctttgcagcttgtaacaaatg 217  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33768391 gttgaatgtaaacactaagtaattatttatgtactgtcttgtgacttttaatttaatagagattacatttatcaattttctttgcagcttgtaacaaatg 33768292  T
Q  218 acatgttcacaagtgtttaccac 240  Q
    |||||||||||||||||||||||    
T  33768291 acatgttcacaagtgtttaccac 33768269  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 33761896 - 33761782
Alignment:
Q  19 ggtggtcttcaagttcttcatcagaatcaatgggtcgacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgatg 118  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| || |||||||||||||| |||||| | || |||||| |||||||||||||||    
T  33761896 ggtggttttcaagttcttcatcagaatcaatgggttgatgttcctccactgcatggatctcttgttgtaaacgttggtgatcttatgcaggtaagtgatg 33761797  T
Q  119 ttaaatgtaaacact 133  Q
     ||||||||||||||    
T  33761796 gtaaatgtaaacact 33761782  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 33771326 - 33771222
Alignment:
Q  22 ggtcttcaagttcttcatcagaatcaatgggtcgacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgatgtta 121  Q
    |||||||||||||||||||| ||||||||| | || ||||||||  | |||||||||||| ||||||| || || |||||||||||||||| | || |||    
T  33771326 ggtcttcaagttcttcatcaaaatcaatggattgatgttcctccggtgcatggatctcttatagtaaatattggtgatcttctgcaggtaactaatttta 33771227  T
Q  122 aatgt 126  Q
    |||||    
T  33771226 aatgt 33771222  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 33771141 - 33771083
Alignment:
Q  178 gattacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgttta 236  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||    
T  33771141 gattacatatatcaatcttgtttgcagcttgtaacaaatgacatgttcacaagtgttta 33771083  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 33761739 - 33761684
Alignment:
Q  181 tacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgttta 236  Q
    ||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||    
T  33761739 tacatttatcattctcctttgcagcttataacaaatgacatgttcacaagtgttta 33761684  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 29463911 - 29463996
Alignment:
Q  19 ggtggtcttcaagttcttcatcagaatcaatgggtcgacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttct 104  Q
    ||||||||||||||||||||| |  || |||||||| ||||||||||  | |||||| ||||||| |||||||| || ||||||||    
T  29463911 ggtggtcttcaagttcttcatgaagataaatgggtcaacgttcctccggtacatggagctcttgttgtaaacataggagatcttct 29463996  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 19891076 - 19891161
Alignment:
Q  19 ggtggtcttcaagttcttcatcagaatcaatgggtcgacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttct 104  Q
    |||||||||||||||||||||  | || |||||||| | || |||||| | |||||| ||||||| |||||| | || ||||||||    
T  19891076 ggtggtcttcaagttcttcatggggataaatgggtcaatgtccctcctatacatggagctcttgtcgtaaacgtaggagatcttct 19891161  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 19769618 - 19769650
Alignment:
Q  19 ggtggtcttcaagttcttcatcagaatcaatgg 51  Q
    ||||| |||||||||||||||||||||||||||    
T  19769618 ggtgggcttcaagttcttcatcagaatcaatgg 19769650  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 26397147 - 26397211
Alignment:
Q  19 ggtggtcttcaagttcttcatcagaatcaatgggtcgacgttcctcctcttcatggatctcttgt 83  Q
    ||||||||||||||||||||| |||||||||||||  ||||| ||||| | |||||| |||||||    
T  26397147 ggtggtcttcaagttcttcatgagaatcaatgggttaacgtttctcctgtgcatggagctcttgt 26397211  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 1094274 - 1094367
Alignment:
Q  19 ggtggtcttcaagttcttcatcagaatcaatgggtcgacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaa 112  Q
    |||||||| |||||||||||| |  || |||||||| || |||||||  | |||||| ||||||| |||||||| || |||||||| |||||||    
T  1094274 ggtggtctacaagttcttcatgaagataaatgggtcaacattcctccgatacatggagctcttgttgtaaacataggagatcttctacaggtaa 1094367  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 49464360 - 49464267
Alignment:
Q  19 ggtggtcttcaagttcttcatcagaatcaatgggtcgacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaa 112  Q
    ||||||||||||||||||||  || || |||||||| |||| |||||  | |||||| ||||||| |||||| | || |||||||| |||||||    
T  49464360 ggtggtcttcaagttcttcacaaggataaatgggtcaacgtccctccggtacatggagctcttgttgtaaacgttggagatcttctacaggtaa 49464267  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 28639475 - 28639394
Alignment:
Q  29 aagttcttcatcagaatcaatgggtcgacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggt 110  Q
    ||||||||||| | ||||||||| | || ||| ||||  |||||||| |||||||||| ||| |||| |||||||| |||||    
T  28639475 aagttcttcatgacaatcaatggattgatgtttctcccattcatggagctcttgtagtgaacgtcggagatcttctacaggt 28639394  T

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