View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-110 (Length: 129)
Name: NF4336-Insertion-110
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-110 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 2e-62; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 35789601 - 35789729
Alignment:
| Q |
1 |
ctactgagaatcacgacttcctcgcctttttcttcaatgttgcggcgggcctctacttctctttccacatccagataaagttcagtgttgacgcttgcgt |
100 |
Q |
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| T |
35789601 |
ctactgagaatcacgacttcctcgcctttttcttcaatgttgcggcaggcctctacttctctttccacatccagataaagttcagtgtcgacgcttgcgt |
35789700 |
T |
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| Q |
101 |
tccagtctatatcatctatgtaaatgtta |
129 |
Q |
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| T |
35789701 |
tccagtctatatcatctatgtaaatgtta |
35789729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 35755653 - 35755737
Alignment:
| Q |
1 |
ctactgagaatcacgacttcctcgcctttttcttcaatgttgcggcgggcctctacttctctttccacatccagataaagttcag |
85 |
Q |
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||||||||||||||| | ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||||| |
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| T |
35755653 |
ctactgagaatcacggcctcctcgcctttttcttctatgttgcggcgggctactgcttctctttccacatccagatatagttcag |
35755737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 35760817 - 35760931
Alignment:
| Q |
7 |
agaatcacgacttcctcgcctttttcttcaatgttgcggcgggcctctacttctctttccacatccagataaagttcagtgttgacgcttgcgttccagt |
106 |
Q |
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|||||||| || |||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||||| || || ||||| ||||| | |
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| T |
35760817 |
agaatcacagctgcctcgcctttttcttccatgttacggcgggcctctgcttctctttccacatcctgataaagttcagggtccacacttgcattccaat |
35760916 |
T |
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| Q |
107 |
ctatatcatctatgt |
121 |
Q |
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| T |
35760917 |
ctacatcatcaatgt |
35760931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 35785749 - 35785877
Alignment:
| Q |
1 |
ctactgagaatcacgacttcctcgcctttttcttcaatgttgcggcgggcctctacttctctttccacatccagataaagttcagtgttgacgcttgcgt |
100 |
Q |
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|||| ||||||||||| ||||||| ||||| || |||||||||||||||||| ||||||||||||| |||| ||||||||||| || | ||||| | |
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| T |
35785749 |
ctaccgagaatcacgatttcctcgggtttttgatccatgttgcggcgggcctctgcttctctttccacctccaaataaagttcagagtcaatacttgcat |
35785848 |
T |
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| Q |
101 |
tccagtctatatcatctatgtaaatgtta |
129 |
Q |
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| T |
35785849 |
tccaatctacatcgtcgatgtaaatgtta |
35785877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 35799263 - 35799372
Alignment:
| Q |
20 |
cctcgcctttttcttcaatgttgcggcgggcctctacttctctttccacatccagataaagttcagtgttgacgcttgcgttccagtctatatcatctat |
119 |
Q |
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|||| |||||||||| |||||| ||||||||||| ||||| ||||||||||| ||| |||||||| | ||| ||||| || | |||| ||||||||| |
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| T |
35799263 |
cctctcctttttcttttatgttgtggcgggcctctgcttctatttccacatcccgatgaagttcagaatcgacacttgcatttgaatctacatcatctat |
35799362 |
T |
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| Q |
120 |
gtaaatgtta |
129 |
Q |
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|||||||||| |
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| T |
35799363 |
gtaaatgtta |
35799372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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