View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-111 (Length: 194)
Name: NF4336-Insertion-111
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-111 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 4e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 10346788 - 10346596
Alignment:
| Q |
3 |
ttattatggaatgccctcatcgtaattcaattttccttacacacggactactctacaacttgtttgcgctacaacacgaacgactcaaactcctattaag |
102 |
Q |
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| T |
10346788 |
ttattatggaatgcccttatcgtaattcaattttccttacacacggacaactctacaactcgtttgcgttacaacacgaacgactcaaactcctattaag |
10346689 |
T |
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| Q |
103 |
tatgctaatacacacaacaactcaagtaaacactagttcttaaggtttct-tacctatcccaagtgaacctcaacaatacacataaatcaaac |
194 |
Q |
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| T |
10346688 |
tatgctaatacacacaacaactcaagtaaacactagttcttaaggtttttctacctatcccaagtgaagctcaacaatacacataaatcaaac |
10346596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 10344819 - 10344633
Alignment:
| Q |
11 |
gaatgccctcatcgtaattcaattttccttacacacggactactctacaacttgtttgcgctacaacacgaacgactcaaactccta---ttaagtatgc |
107 |
Q |
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| T |
10344819 |
gaatgcccttatcgtatttcaattttccttaaacatgtacaactctacaactcgtatgctctacaacacaaacgactccacctcctcgagttaagtaacc |
10344720 |
T |
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| Q |
108 |
taatacacacaacaactcaagtaaacactagttcttaaggtttcttacctatcccaagtgaacctcaacaatacacataaatcaaac |
194 |
Q |
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| T |
10344719 |
taatacacacgacaactcaagtaaacaccagttcttaaagttttctacctatcccaggtgaacctcaacaatacacataaatcaaac |
10344633 |
T |
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