View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-116 (Length: 71)
Name: NF4336-Insertion-116
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-116 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-33
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 52481331 - 52481261
Alignment:
| Q |
1 |
ttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttga |
71 |
Q |
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| T |
52481331 |
ttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttga |
52481261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16408021 - 16408091
Alignment:
| Q |
1 |
ttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttga |
71 |
Q |
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| T |
16408021 |
ttattaattttttgcgagcatcttgcaactcgtcattagttttgcgctcttgaacaacaagtgtttgttga |
16408091 |
T |
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Target: chr2 (Bit Score: 47; Significance: 1e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40751945 - 40751875
Alignment:
| Q |
1 |
ttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttga |
71 |
Q |
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| T |
40751945 |
ttattaactttttgcgggcatcttgcaattcgtcattagttttgcgttcctgaacaaccagtgtttgttga |
40751875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 41484695 - 41484626
Alignment:
| Q |
2 |
tattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttga |
71 |
Q |
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| T |
41484695 |
tattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtgtttgttga |
41484626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 41477682 - 41477620
Alignment:
| Q |
9 |
ttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttga |
71 |
Q |
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| T |
41477682 |
tttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttga |
41477620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 41470794 - 41470740
Alignment:
| Q |
9 |
ttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtg |
63 |
Q |
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| T |
41470794 |
tttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtg |
41470740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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