View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-12 (Length: 175)
Name: NF4336-Insertion-12
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-12 |
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| [»] chr4 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 2e-87; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 2e-87
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 6007515 - 6007341
Alignment:
| Q |
1 |
taaacaacatcaaatcaatcaatctgtcaaaccaatctactattccttcaaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcac |
100 |
Q |
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| T |
6007515 |
taaaccacatcaaatcaatcaatctgtcaaaccaatctactattccttcaaatgggttgcgagctttgtcagaaaaatgtacatctttgacctctctcac |
6007416 |
T |
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| Q |
101 |
gtgttccaacattgattatataagtatccctgacatagttcttatctctgattgttttcctttactcgaagaact |
175 |
Q |
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| T |
6007415 |
gtgttccaacattgattatataagtatccctgacatagttcttatctctgattgttttcctttactcgaagaact |
6007341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 2547356 - 2547321
Alignment:
| Q |
42 |
attccttcaaatgggttgcgagctttgtctgaaaag |
77 |
Q |
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| T |
2547356 |
attcctgcaaatgggttgcgagctttgtctgaaaag |
2547321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 1755606 - 1755548
Alignment:
| Q |
54 |
gggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgttccaacat |
112 |
Q |
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| T |
1755606 |
gggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacat |
1755548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 548048 - 548005
Alignment:
| Q |
74 |
aaagtgtacatctttgacctctctcacgtgttccaacattgatt |
117 |
Q |
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| T |
548048 |
aaagtttacaactttgaactctctcacttgttccaacattgatt |
548005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 148 - 175
Target Start/End: Complemental strand, 2471762 - 2471735
Alignment:
| Q |
148 |
ctgattgttttcctttactcgaagaact |
175 |
Q |
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| T |
2471762 |
ctgattgttttcctttactcgaagaact |
2471735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 8186388 - 8186483
Alignment:
| Q |
80 |
tacatctttgacctctctcacgtgttccaacattgattatataagtatccctgacatagttcttatctctgattgttttcctttactcgaagaact |
175 |
Q |
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| T |
8186388 |
tacaactttgacctcactcacatgttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaact |
8186483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 51763382 - 51763455
Alignment:
| Q |
43 |
ttccttcaaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgttccaacattgat |
116 |
Q |
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| T |
51763382 |
ttcctacaaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcccacattgat |
51763455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 13469604 - 13469712
Alignment:
| Q |
6 |
aacatcaaatcaatcaatctgtcaaaccaatctactattccttcaaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgtt |
105 |
Q |
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| T |
13469604 |
aacatcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgtt |
13469703 |
T |
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| Q |
106 |
ccaacattg |
114 |
Q |
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| T |
13469704 |
cccacattg |
13469712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 10169048 - 10169115
Alignment:
| Q |
49 |
caaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgttccaacattgat |
116 |
Q |
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| T |
10169048 |
caaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgacattgat |
10169115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 10176573 - 10176640
Alignment:
| Q |
49 |
caaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgttccaacattgat |
116 |
Q |
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| T |
10176573 |
caaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgacattgat |
10176640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 10615771 - 10615708
Alignment:
| Q |
49 |
caaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgttccaacat |
112 |
Q |
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| T |
10615771 |
caaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcccacat |
10615708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 1036640 - 1036735
Alignment:
| Q |
80 |
tacatctttgacctctctcacgtgttccaacattgattatataagtatccctgacatagttcttatctctgattgttttcctttactcgaagaact |
175 |
Q |
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| T |
1036640 |
tacaactttgacttctctcatttgttccaacattgcttctatatgtaacaatgatcttgttcttatttctgattgctttcctttccttgaagaact |
1036735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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