View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-135 (Length: 119)
Name: NF4336-Insertion-135
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-135 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 4e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 4e-54
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 41136512 - 41136626
Alignment:
| Q |
5 |
ctagacatcatttacaaaatttaaggagcaaaaagtaatatgcatcgtttccatccattacctaagattgtatcatccttttcaaattaccaaaattgat |
104 |
Q |
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| T |
41136512 |
ctaggcatcatttacaaaatttaaggagcaaaaagtaatatgcatcgtttccatccattacctaagattgtatcatccttttcaaattaccaaaattgat |
41136611 |
T |
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| Q |
105 |
ttcaactcatagagg |
119 |
Q |
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| T |
41136612 |
ttcaactcaaagagg |
41136626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 34094680 - 34094787
Alignment:
| Q |
13 |
catttacaaaatttaaggagcaaaaagtaatatgcatcgtttccatccattac-ctaagattgtatcatcc-ttttcaaattaccaaaattgatttcaac |
110 |
Q |
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| T |
34094680 |
catttacaaaatttaaggagcaaaaa-taatatgcatcgttttctaccattggacttagattatatcatcccttttcaaattacaaaaattgatttcaac |
34094778 |
T |
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| Q |
111 |
tcatagagg |
119 |
Q |
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| T |
34094779 |
tcatagagg |
34094787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 29786886 - 29786769
Alignment:
| Q |
10 |
catcatttacaaaatttaaggagcaaaaagtaatatgcatcgtt--------tccatccattacctaagattgtatcatccttttcaaattaccaaaatt |
101 |
Q |
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| T |
29786886 |
catcatttacaaaatttaaggagcaaaaagtaatatgcatcgttccatccattccatccattacctaagattgtatcatccttttcaaattaccaaaatt |
29786787 |
T |
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| Q |
102 |
gatttcaactcatagagg |
119 |
Q |
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| T |
29786786 |
gatttcaactcatagagg |
29786769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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