View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-14 (Length: 244)
Name: NF4336-Insertion-14
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-14 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 5811159 - 5811387
Alignment:
| Q |
6 |
gacatttgatggggcttgtgctcgtcaggtaaatgttgcccttgttgttgtctccaacctcaggaatctatacaaatagattaaatatagagaaatgttt |
105 |
Q |
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| T |
5811159 |
gacatttga-ggggcttgtgctcgtcaggtaaatgttgcccttgttgttgtctccaacctcaggaatctatacaaatagattaaatatagagaaatgttt |
5811257 |
T |
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| Q |
106 |
atattgtggcgaaacatttattaaatggatgttaatagattaccaaaagactaagaaaatgtaattgttataaacaaaccttagatagccattgaagact |
205 |
Q |
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| T |
5811258 |
atattgtggcaaaacatttattaaatggatgttaatagattaccaaaagactaagaaaatataattgttataaacaaaccttagataaccattgaagact |
5811357 |
T |
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| Q |
206 |
gtaagaagaatgcacaaaatgcaaactttt |
235 |
Q |
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| T |
5811358 |
gtaagaagaatgcacaaaatgcaaactttt |
5811387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 27736645 - 27736703
Alignment:
| Q |
174 |
tataaacaaaccttagatagccattgaagactgtaagaagaatgcacaaaatgcaaact |
232 |
Q |
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| T |
27736645 |
tataaacaaaccttagatagccattgaagactatacgaggaatgaacaaaatgcaaact |
27736703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 27736441 - 27736482
Alignment:
| Q |
16 |
ggggcttgtgctcgtcaggtaaatgttgcccttgttgttgtc |
57 |
Q |
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| T |
27736441 |
ggggcttgtgctcgtcaggtaaatgtttcccttgttgttgtc |
27736482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 32709621 - 32709679
Alignment:
| Q |
176 |
taaacaaaccttagatagccattgaagactgtaagaagaatgcacaaaatgcaaacttt |
234 |
Q |
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| T |
32709621 |
taaacaaaccttagatagccacataaggctgtaagaggaatggacaaaatgcaaacttt |
32709679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 32627687 - 32627741
Alignment:
| Q |
180 |
caaaccttagatagccattgaagactgtaagaagaatgcacaaaatgcaaacttt |
234 |
Q |
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| T |
32627687 |
caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaacttt |
32627741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 32627562 - 32627598
Alignment:
| Q |
35 |
taaatgttgcccttgttgttgtctccaacctcaggaa |
71 |
Q |
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| T |
32627562 |
taaatgttgcccttgttgttgtctgcaccctcaggaa |
32627598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21943262 - 21943318
Alignment:
| Q |
1 |
ttgaagacatttgatggggcttgtgctcgtcaggtaaatgttgcccttgttgttgtct |
58 |
Q |
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| T |
21943262 |
ttgaagacatttga-ggggcttgtggtcgccaagtaaatgttgcccttattgttgtct |
21943318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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