View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-140 (Length: 181)
Name: NF4336-Insertion-140
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-140 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 4e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 42193432 - 42193256
Alignment:
| Q |
6 |
tctttaatacaagaaaaatcacagaacactaggctgccaaacttgagtgcttaattataaagctttgttttatcaaaccaaacaagcacttagtgctctt |
105 |
Q |
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| T |
42193432 |
tctttaatacaagaaaaatcacagaacactaggctgccaaacttgagtgcttaattataaagctttgttttatcaaaccaaacaagcacttagtgctctt |
42193333 |
T |
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| Q |
106 |
cgtttgtgttggaaaca-aaaactcattcaggtttcacttcgtagacatctttagtgcttcacttcccaaatagttt |
181 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42193332 |
tgtttgtgttggaaacaaaaaactcattcatgtttcacttcgtagacatctttagtgcttcacttcccaaatagttt |
42193256 |
T |
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