View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-142 (Length: 252)
Name: NF4336-Insertion-142
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-142 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 11119369 - 11119118
Alignment:
| Q |
1 |
gatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119369 |
gatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttct |
11119270 |
T |
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| Q |
101 |
ggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119269 |
ggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctt |
11119170 |
T |
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| Q |
201 |
tttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgtt |
252 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
11119169 |
tttaccttgaagattgttgtagtagttcttgtcgaatttatcgggagttgtt |
11119118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 11111598 - 11111351
Alignment:
| Q |
1 |
gatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttct |
100 |
Q |
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||||||||||||| ||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11111598 |
gatttcttgttaataaaattgcattgttttctaatttctcctttctttccggtaagcacatcaatattacccattttaatcattgaatttataaagttct |
11111499 |
T |
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| Q |
101 |
ggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctt |
200 |
Q |
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| T |
11111498 |
gaaagaaaacattttggctatttgcaaagctgttgacaatgctaatggtatctgcacccggtgttgagaataattcttggtcactttgaagcaaaccctt |
11111399 |
T |
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| Q |
201 |
tttaccttgaagattgttgtagtagttcttgtctaatttatcaggagt |
248 |
Q |
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|||||||||||||||||||||| |||||||||| ||| |||||||||| |
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| T |
11111398 |
tttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagt |
11111351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 10793196 - 10793443
Alignment:
| Q |
1 |
gatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttct |
100 |
Q |
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||||| ||||||||||||||||| || || || ||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||| |
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| T |
10793196 |
gattttttgttaacaaaattgcattgtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatcattgctttcttaaagctct |
10793295 |
T |
|
| Q |
101 |
ggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctt |
200 |
Q |
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|||||| || ||||||| || ||||||| || ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
10793296 |
caaagaaagcactttggttattggcaaagttattaacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtcactttgaagcaaaccctt |
10793395 |
T |
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| Q |
201 |
tttaccttgaagattgttgtagtagttcttgtctaatttatcaggagt |
248 |
Q |
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|||| | ||||||||||||||| |||||||||| ||| |||||||||| |
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| T |
10793396 |
tttaacctgaagattgttgtagaagttcttgtccaatgtatcaggagt |
10793443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 11156842 - 11156603
Alignment:
| Q |
9 |
gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa |
108 |
Q |
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||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |
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| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
|
| Q |
109 |
acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttacctt |
208 |
Q |
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| T |
11156742 |
gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcactt |
11156643 |
T |
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| Q |
209 |
gaagattgttgtagtagttcttgtctaatttatcaggagt |
248 |
Q |
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|||||||| ||| ||||||||||| |||||||||||||| |
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| T |
11156642 |
gaagattggagtaatagttcttgtcaaatttatcaggagt |
11156603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 11137899 - 11137661
Alignment:
| Q |
10 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
109 |
Q |
| |
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|||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| | | |||| | | |||||| |
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| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaaagaaag |
11137800 |
T |
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| Q |
110 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
209 |
Q |
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|||||| || | || ||||||||||||||||||||||| ||||| | ||| ||||| | ||||||||||| |||||||||||||||||||| || |
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| T |
11137799 |
catttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctg |
11137700 |
T |
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| Q |
210 |
aagattgttgtagtagttcttgtctaatttatcaggagt |
248 |
Q |
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||||||| ||||||||||||||| |||||||||||||| |
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| T |
11137699 |
aagattggagtagtagttcttgtcaaatttatcaggagt |
11137661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 11146089 - 11145966
Alignment:
| Q |
125 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
224 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || |
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| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata |
11145990 |
T |
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| Q |
225 |
gttcttgtctaatttatcaggagt |
248 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
11145989 |
gttcttgtcaaatttatcaggagt |
11145966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 11150173 - 11149935
Alignment:
| Q |
10 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
109 |
Q |
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|||||||| ||||| || |||||||| ||||||| || ||||| | ||| |||||||| |||||||| ||||| | | ||||| ||| || ||| |
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| T |
11150173 |
ttaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcatagcagccttaaagctctcaaaaaaag |
11150074 |
T |
|
| Q |
110 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
209 |
Q |
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| ||||| | | || |||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| |||||||| |||||||||||||| |||| |
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| T |
11150073 |
ctttttgatcggttgcaaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttg |
11149974 |
T |
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| Q |
210 |
aagattgttgtagtagttcttgtctaatttatcaggagt |
248 |
Q |
| |
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|||||| ||| ||||||||||| |||||||||||||| |
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| T |
11149973 |
aagattagagtaatagttcttgtcaaatttatcaggagt |
11149935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
| Q |
144 |
aatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
202 |
Q |
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||||||||| ||||| ||||| || ||||||||||||||||| |||| ||| ||||||| |
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| T |
11183613 |
aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt |
11183671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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